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The Landscape of Causal Discovery Data: Grounding Causal Discovery in Real-World Applications

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arxiv 2412.01953 v2 pith:ZPEK4Y73 submitted 2024-12-02 cs.LG stat.ME

classification cs.LGstat.ME
keywords causaldiscoveryapplicationsdatasetsreal-worlddataevaluationmethods
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Causal discovery aims to automatically uncover causal relationships from data, a capability with significant potential across many scientific disciplines. However, its real-world applications remain limited. Current methods often rely on unrealistic assumptions and are evaluated only on simple synthetic toy datasets, often with inadequate evaluation metrics. In this paper, we substantiate these claims by performing a systematic review of the recent causal discovery literature. We present applications in biology, neuroscience, and Earth sciences - fields where causal discovery holds promise for addressing key challenges. We highlight available simulated and real-world datasets from these domains and discuss common assumption violations that have spurred the development of new methods. Our goal is to encourage the community to adopt better evaluation practices by utilizing realistic datasets and more adequate metrics.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Causal Discovery of Radiation Response Mechanisms in Human Cells

    q-bio.GN 2026-07 conditional novelty 6.0 of 10

    Causal graphs learned from 108 low-dose-radiation RNA-seq samples yield gene sets more enriched for radiation-response pathways than differential-expression baselines and show transcription-factor hubs and housekeeping sinks.

  2. Decentralized Causal Discovery using Judo Calculus

    cs.AI 2025-10 reject novelty 4.0 of 10

    Running standard causal-discovery methods per regime and keeping only edges that persist across regimes ('j-stable aggregation') improves precision and parallelism over pooled fits.

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