ConTact decomposes CDR design into surface fingerprint learning, contact prediction, and contact-gated sequence generation using distance-biased attention and weighted loss, reporting 7% RMSD and 10% F1 gains on CHIMERA-Bench.
Simulation-free schr\
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Derives a conditional-marginal entropy-rate objective for bridge-aware discretization that yields U-shaped schedules and improves low-NFE sample quality on 2D, CIFAR-10, and protein tasks.
Wasserstein Lagrangian Mechanics formalizes second-order dynamics in Wasserstein space and provides an algorithm to learn them from observed marginals without specifying the Lagrangian, outperforming gradient flows on various dynamics.
STMD distills the full transition map of diffusion sampling SDEs into a conditional Mean Flow model to enable fast one- or few-step stochastic sampling without teacher models or bi-level optimization.
ABC enables any-subset autoregressive generation of continuous stochastic processes via non-Markovian diffusion bridges that track physical time and allow path-dependent conditioning.
SplineFlow uses B-spline interpolation inside flow matching to jointly construct stable conditional paths that satisfy multi-marginal constraints for dynamical systems with irregular observations.
AgForce improves antigen-conditioned antibody design by using framework dropout, gated bottlenecks, hyperbolic cross attention, MDN sequence head with Potts-like coupling, annealed MCL, and antigen cycle consistency to achieve 8% better amino acid recovery and superior binding metrics on CHIMERA-BEN
EvoStruct integrates evolutionary priors from a protein language model with structural priors from an E(3)-equivariant GNN to raise amino acid recovery by 16% and diversity by 2.3x on CHIMERA-Bench while cutting perplexity 43%.
citing papers explorer
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ConTact: Contact-First Antibody CDR Design via Explicit Interface Reasoning
ConTact decomposes CDR design into surface fingerprint learning, contact prediction, and contact-gated sequence generation using distance-biased attention and weighted loss, reporting 7% RMSD and 10% F1 gains on CHIMERA-Bench.
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Entropy Across the Bridge: Conditional-Marginal Discretization for Flow and Schr\"odinger Samplers
Derives a conditional-marginal entropy-rate objective for bridge-aware discretization that yields U-shaped schedules and improves low-NFE sample quality on 2D, CIFAR-10, and protein tasks.
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A Call to Lagrangian Action: Learning Population Mechanics from Temporal Snapshots
Wasserstein Lagrangian Mechanics formalizes second-order dynamics in Wasserstein space and provides an algorithm to learn them from observed marginals without specifying the Lagrangian, outperforming gradient flows on various dynamics.
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Stochastic Transition-Map Distillation for Fast Probabilistic Inference
STMD distills the full transition map of diffusion sampling SDEs into a conditional Mean Flow model to enable fast one- or few-step stochastic sampling without teacher models or bi-level optimization.
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ABC: Any-Subset Autoregression via Non-Markovian Diffusion Bridges in Continuous Time and Space
ABC enables any-subset autoregressive generation of continuous stochastic processes via non-Markovian diffusion bridges that track physical time and allow path-dependent conditioning.
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SplineFlow: Flow Matching for Dynamical Systems with B-Spline Interpolants
SplineFlow uses B-spline interpolation inside flow matching to jointly construct stable conditional paths that satisfy multi-marginal constraints for dynamical systems with irregular observations.
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AgForce Enables Antigen-conditioned Generative Antibody Design
AgForce improves antigen-conditioned antibody design by using framework dropout, gated bottlenecks, hyperbolic cross attention, MDN sequence head with Potts-like coupling, annealed MCL, and antigen cycle consistency to achieve 8% better amino acid recovery and superior binding metrics on CHIMERA-BEN
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EvoStruct: Bridging Evolutionary and Structural Priors for Antibody CDR Design via Protein Language Model Adaptation
EvoStruct integrates evolutionary priors from a protein language model with structural priors from an E(3)-equivariant GNN to raise amino acid recovery by 16% and diversity by 2.3x on CHIMERA-Bench while cutting perplexity 43%.
- Rectified Schr\"odinger Bridge Matching for Few-Step Visual Navigation