pith. sign in

arxiv: cond-mat/0302603 · v1 · pith:CGLNR6ULnew · submitted 2003-02-28 · ❄️ cond-mat.stat-mech · cond-mat.dis-nn· cond-mat.soft· physics.bio-ph· q-bio.QM

Localization of Denaturation Bubbles in Random DNA Sequences

classification ❄️ cond-mat.stat-mech cond-mat.dis-nncond-mat.softphysics.bio-phq-bio.QM
keywords bubblesdenaturationdynamiclocalizedrandomaboveagingarguments
0
0 comments X
read the original abstract

We study the thermodynamic and dynamic behaviors of twist-induced denaturation bubbles in a long, stretched random sequence of DNA. The small bubbles associated with weak twist are delocalized. Above a threshold torque, the bubbles of several tens of bases or larger become preferentially localized to \AT-rich segments. In the localized regime, the bubbles exhibit ``aging'' and move around sub-diffusively with continuously varying dynamic exponents. These properties are derived using results of large-deviation theory together with scaling arguments, and are verified by Monte-Carlo simulations.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.