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Molecular recognition in a lattice model: An enumeration study

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arxiv physics/0501016 v2 pith:JOZP22OL submitted 2005-01-05 physics.bio-ph physics.chem-ph

Molecular recognition in a lattice model: An enumeration study

classification physics.bio-ph physics.chem-ph
keywords molecularrecognitionenumerationheteropolymerslatticeselectiveadsorptionanalyze
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We investigate the mechanisms underlying selective molecular recognition of single heteropolymers at chemically structured planar surfaces. To this end, we study systems with two-letter (HP) lattice heteropolymers by exact enumeration techniques. Selectivity for a particular surface is defined by an adsorption energy criterium. We analyze the distributions of selective sequences and the role of mutations. A particularly important factor for molecular recognition is the small-scale structure on the polymers.

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