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Quality control by a mobile molecular workshop: quality versus quantity

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arxiv 1006.0611 v3 pith:KJS2OWYY submitted 2010-06-03 physics.bio-ph cond-mat.stat-mechq-bio.SC

Quality control by a mobile molecular workshop: quality versus quantity

classification physics.bio-ph cond-mat.stat-mechq-bio.SC
keywords qualityquantityanalyticallycalculatecontroldefinefidelitymachine
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Ribosome is a molecular machine that moves on a mRNA track while, simultaneously, polymerizing a protein using the mRNA also as the corresponding template. We define, and analytically calculate, two different measures of the efficiency of this machine. However, we arugue that its performance is evaluated better in terms of the translational fidelity and the speed with which it polymerizes a protein. We define both these quantities and calculate these analytically. Fidelity is a measure of the quality of the products while the total quantity of products synthesized in a given interval depends on the speed of polymerization. We show that for synthesizing a large quantity of proteins, it is not necessary to sacrifice the quality. We also explore the effects of the quality control mechanism on the strength of mechano-chemical coupling. We suggest experiments for testing some of the ideas presented here.

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