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An efficient label-free analyte detection algorithm for time-resolved spectroscopy

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arxiv 2011.07470 v1 pith:DD4FRCLF submitted 2020-11-15 cs.LG eess.SP

An efficient label-free analyte detection algorithm for time-resolved spectroscopy

classification cs.LG eess.SP
keywords detectionanalysisanalytelabel-freeproblemalgorithmlearningspectroscopy
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Time-resolved spectral techniques play an important analysis tool in many contexts, from physical chemistry to biomedicine. Customarily, the label-free detection of analytes is manually performed by experts through the aid of classic dimensionality-reduction methods, such as Principal Component Analysis (PCA) and Non-negative Matrix Factorization (NMF). This fundamental reliance on expert analysis for unknown analyte detection severely hinders the applicability and the throughput of these such techniques. For this reason, in this paper, we formulate this detection problem as an unsupervised learning problem and propose a novel machine learning algorithm for label-free analyte detection. To show the effectiveness of the proposed solution, we consider the problem of detecting the amino-acids in Liquid Chromatography coupled with Raman spectroscopy (LC-Raman).

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    RamanBench unifies 74 datasets into the first large-scale reproducible benchmark for ML on Raman spectra, finding tabular foundation models outperform baselines but no method generalizes across datasets.