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The TopCoW Challenge -- Topology-Aware Circle of Willis Segmentation for CT and MR Angiography

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arxiv 2312.17670 v5 pith:VAVOQBY4 submitted 2023-12-29 cs.CV cs.LGq-bio.QMq-bio.TO

The TopCoW Challenge -- Topology-Aware Circle of Willis Segmentation for CT and MR Angiography

Kaiyuan Yang , Fabio Musio , Yihui Ma , Norman Juchler , Johannes C. Paetzold , Rami Al-Maskari , Luciano H\"oher , Hongwei Bran Li
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Ibrahim Ethem Hamamci Anjany Sekuboyina Suprosanna Shit Houjing Huang Chinmay Prabhakar Ezequiel de la Rosa Bastian Wittmann Diana Waldmannstetter Florian Kofler Fernando Navarro Martin J. Menten Ivan Ezhov Daniel Rueckert Iris N. Vos Ynte M. Ruigrok Birgitta K. Velthuis Hugo J. Kuijf Pengcheng Shi Wei Liu Ting Ma Maximilian R. Rokuss Yannick Kirchhoff Fabian Isensee Klaus Maier-Hein Chengcheng Zhu Huilin Zhao Philippe Bijlenga Julien H\"ammerli Catherine Wurster Laura Westphal Jeroen Bisschop Elisa Colombo Hakim Baazaoui Hannah-Lea Handelsmann Andrew Makmur James Hallinan Amrish Soundararajan Benedikt Wiestler Jan S. Kirschke Evamaria O. Riedel Roland Wiest Emmanuel Montagnon Laurent Letourneau-Guillon Kwanseok Oh Dahye Lee Orhun Utku Aydin Adam Hilbert Jana Rieger Dimitrios Rallios Satoru Tanioka Alexander Koch Dietmar Frey Abdul Qayyum Moona Mazher Steven Niederer Nico Disch Julius C. Holzschuh Dominic LaBella Francesco Galati Daniele Falcetta Maria A. Zuluaga Chaolong Lin Haoran Zhao Zehan Zhang Minghui Zhang Xin You Hanxiao Zhang Guang-Zhong Yang Yun Gu Sinyoung Ra Jongyun Hwang Hyunjin Park Junqiang Chen Marek Wodzinski Henning M\"uller Nesrin Mansouri Florent Autrusseau Cansu Yalcin Rachika E. Hamadache Clara Lisazo Joaquim Salvi Adri\`a Casamitjana Xavier Llad\'o Uma Maria Lal-Trehan Estrada Valeriia Abramova Luca Giancardo Arnau Oliver Paula Casademunt Adrian Galdran Matteo Delucchi Oscar Camara Jialu Liu Haibin Huang Yue Cui Zehang Lin Yusheng Liu Shunzhi Zhu Tatsat R. Patel Adnan H. Siddiqui Vincent M. Tutino Maysam Orouskhani Huayu Wang Mahmud Mossa-Basha Yuki Sato Sven Hirsch Susanne Wegener Bjoern Menze
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classification cs.CV cs.LGq-bio.QMq-bio.TO
keywords segmentationalgorithmsanatomyangiographybenchmarkclassificationclinicalvariant
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to influence the risk, severity, and outcome of serious neurovascular diseases. However, characterizing the highly variable CoW anatomy remains a manual and time-consuming expert task. The CoW is commonly imaged by two non-invasive angiographic imaging modalities, magnetic resonance angiography (MRA) and computed tomography angiography (CTA), yet few datasets with annotated CoW anatomy exist, and there have been no established benchmarks for comparing CoW segmentation algorithms. We organized the TopCoW benchmark challenge alongside the release of an annotated CoW dataset with 125 paired MRA and CTA scans from the same patients. Voxel-level annotations for 13 vessel components were created using virtual reality technology and verified by clinical experts. Participants submitted algorithms for CoW segmentation and variant classification, which we evaluated on internal and external test sets comprising 226 scans from over five centers. The benchmark includes voxel-level segmentation, CoW component detection, CoW variant classification, and two clinical application tasks. We received submissions from over 250 participants across six continents. Top-performing teams achieved over 90% Dice scores for CoW segmentation, over 80% F1 scores for detecting key vessel components, and over 70% balanced accuracy in CoW variant classification across nearly all test sets. The best algorithms also supported clinically relevant downstream tasks by accurately classifying fetal-type posterior cerebral arteries and localizing aneurysms in relation to CoW anatomy. This benchmark demonstrated the utility of CoW segmentation algorithms for some downstream clinical applications with explainability.

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Cited by 4 Pith papers

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