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arxiv: 1501.05267 · v3 · pith:D65ZEWPTnew · submitted 2015-01-21 · ❄️ cond-mat.soft · hep-lat· hep-th· physics.bio-ph· q-bio.BM

On phase diagram and the pseudogap state in a linear chiral homopolymer model

classification ❄️ cond-mat.soft hep-lathep-thphysics.bio-phq-bio.BM
keywords phasetemperaturechainregimeattractivechiralityhighhomopolymer
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The phase structure of a homopolymer chain is investigated in terms of a universal theoretical model, designed to describe the infrared limit of slow spatial variations. The effects of chirality are studied and compared with the influence of a short-range attractive interaction between monomers, at various ambient temperature values. In the high temperature limit the homopolymer chain is in the self-avoiding random walk phase. But at low temperatures, two different phases are possible: When short-range attractive interactions dominate over chirality, the chain collapses into a space- filling conformation. But when the attractive interactions become weaker, there is a low temperature unfolding transition and the chain becomes like a straight rod. Between the high temperature and low temperature limits, several intermediate states are observed. For sufficiently high values of short-range attraction, the conventional {\theta}-regime is observed between the self-avoiding random walk phase and the space filling collapsed phase. But when chirality increases, there is a trasition from the {\theta}-regime to a pseudogap state. Moreover, a regime akin the {\theta}-regime is identified between the pseudogap state, and the low temperature phase where the chain is like a straight rod. Applications to polymers and proteins, in particular collagen, are suggested.

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