Pith. sign in

REVIEW

Excluded Volume Effect in Unzipping DNA with a Force

Not yet reviewed by Pith; the record is open.

This paper has not been read by Pith yet. Machine review is queued; the pith claim, tier, and objections will appear here once it completes.

SPECIMEN: schema-true, not a live event

T0 review · schema-true

One-sentence machine reading of the paper's core claim.

pith:XXXXXXXX · record.json · timestamp

arxiv cond-mat/0402176 v1 pith:GBWJOIIW submitted 2004-02-05 cond-mat.soft cond-mat.stat-mech

Excluded Volume Effect in Unzipping DNA with a Force

classification cond-mat.soft cond-mat.stat-mech
keywords forceunzippedchangedcriticaldependsdiagrameffectexcluded
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
0 comments
read the original abstract

A double stranded DNA molecule when pulled with a force acting on one end of the molecule can become either partially or completely unzipped depending on the magnitude of the force F. For a random DNA sequence, the number M of unzipped base pairs goes as M~(F-Fc)^(-2) and diverges at the critical force Fc with an exponent \chi=2. We find that when excluded volume effect is taken into account for the unzipped part of the DNA, the exponent \chi=2 is not changed but the critical force Fc is changed. The force versus temperature phase diagram depends on only two parameters in the model, the persistence length and the denaturation temperature. Furthermore a scaling form of the phase diagram can be found. This scaling form is parameter independent and depends only on the spatial dimension. It applies to all DNA molecules and should provide a useful framework for comparison with experiments.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.