Pith. sign in

REVIEW 2 cited by

Optimal Rejection-Free Path Sampling

Not yet reviewed by Pith; the record is open.

This paper has not been read by Pith yet. Machine review is queued; the pith claim, tier, and objections will appear here once it completes.

SPECIMEN: schema-true, not a live event

T0 review · schema-true

One-sentence machine reading of the paper's core claim.

pith:XXXXXXXX · record.json · timestamp

arxiv 2503.21037 v1 pith:ICSKVCLX submitted 2025-03-26 physics.chem-ph cond-mat.stat-mechphysics.comp-ph

classification physics.chem-phcond-mat.stat-mechphysics.comp-ph
keywords pathsamplingmolecularenergyfreeoptimalalgorithmcoordinate
verification ladder T0 review T1 audit T2 compute T3 formal
0 comments
read the original abstract

We propose an efficient novel path sampling-based framework designed to accelerate the investigation of rare events in complex molecular systems. A key innovation is the shift from sampling restricted path ensemble distributions, as in transition path sampling, to directly sampling the distribution of shooting points. This allows for a rejection-free algorithm that samples the entire path ensemble efficiently. Optimal sampling is achieved by applying a selection bias that is the inverse of the free energy along a reaction coordinate. The optimal reaction coordinate, the committor, is iteratively constructed as a neural network using AI for Molecular Mechanism Discovery (AIMMD), concurrently with the free energy profile, which is obtained through reweighting the sampled path ensembles. We showcase our algorithm on theoretical and molecular bechnmarks, and demonstrate how it provides at the same time molecular mechanism, free energy, and rates at a moderate computational cost.

Discussion (0). Continue with ORCID to comment.

Forward citations

Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Committors and Reaction Rates from Trial Functions That Violate the Boundary Conditions

    physics.chem-ph 2026-08 conditional novelty 8.0 of 10

    Committors and rates can be estimated from equilibrium samples and two state definitions by minimizing a boundary-free energy/fidelity ratio over ridge functions.

  2. Accelerated descriptor-free path sampling for protein-ligand binding kinetics

    physics.chem-ph 2026-07 conditional novelty 6.0 of 10

    Accelerated AIMMD, combining a descriptor-free PaiNN committor with a basin-restricted OPES bias, recovers protein–ligand unbinding rates within a small factor of experiment or unbiased-MD references, whereas standard...

Pith tools