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Optimal Rejection-Free Path Sampling
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We propose an efficient novel path sampling-based framework designed to accelerate the investigation of rare events in complex molecular systems. A key innovation is the shift from sampling restricted path ensemble distributions, as in transition path sampling, to directly sampling the distribution of shooting points. This allows for a rejection-free algorithm that samples the entire path ensemble efficiently. Optimal sampling is achieved by applying a selection bias that is the inverse of the free energy along a reaction coordinate. The optimal reaction coordinate, the committor, is iteratively constructed as a neural network using AI for Molecular Mechanism Discovery (AIMMD), concurrently with the free energy profile, which is obtained through reweighting the sampled path ensembles. We showcase our algorithm on theoretical and molecular bechnmarks, and demonstrate how it provides at the same time molecular mechanism, free energy, and rates at a moderate computational cost.
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Cited by 2 Pith papers
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Committors and Reaction Rates from Trial Functions That Violate the Boundary Conditions
Committors and rates can be estimated from equilibrium samples and two state definitions by minimizing a boundary-free energy/fidelity ratio over ridge functions.
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Accelerated descriptor-free path sampling for protein-ligand binding kinetics
Accelerated AIMMD, combining a descriptor-free PaiNN committor with a basin-restricted OPES bias, recovers protein–ligand unbinding rates within a small factor of experiment or unbiased-MD references, whereas standard...
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