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Chemically active droplets in crowded environments

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arxiv 2505.11188 v1 pith:MPCZ2ZKS submitted 2025-05-16 cond-mat.soft physics.bio-ph

Chemically active droplets in crowded environments

classification cond-mat.soft physics.bio-ph
keywords activechemicallydropletscellularenvironmentscondensatescrowdedcrowding
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Biomolecular condensates are essential for cellular organization and result from phase separation in systems far from thermodynamic equilibrium. Among various models, chemically active droplets play a significant role, consisting of proteins that switch between attractive and repulsive states via nonequilibrium chemical reactions. While field-based simulations have provided insights into their behavior, these coarse-grained approaches fail to capture molecular-scale effects, particularly in crowded cellular environments. Macromolecular crowding, a key feature of intracellular organization, strongly influences molecular transport within condensates, yet its quantitative impact remains underexplored. This study investigates the interplay between chemically active droplets and crowders by using particle-based models, that provide molecular insight, and a field-based model, that complements this picture. Surprisingly, crowding reduces droplet size while expanding the overall dense phase volume, challenging equilibrium-based expectations. This effect arises from the interplay between depletion interactions, diffusion hindrance, and nonequilibrium particle fluxes. Our findings provide a step towards a more comprehensive understanding of chemically active droplets in complex, realistic cellular environments.

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Cited by 3 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score.

  1. Metastable phase separation and information retrieval in multicomponent mixtures

    cond-mat.stat-mech 2025-09 conditional novelty 7.0

    Metastable phase-separated states in multicomponent liquids can store and retrieve compositional information, as shown in a Hopfield-liquid model with matching simulations.

  2. Active Transport as a Mechanism of Microphase Selection in Biomolecular Condensates

    physics.bio-ph 2026-04 unverdicted novelty 6.0

    Active transport via motor-protein binding generates long-range repulsion that selects finite sizes for biomolecular condensates in a minimal diffusion-transport model.

  3. Depletion-Induced Interactions Modulate Nanoscale Protein Diffusion in Polymeric Crowder Solutions

    cond-mat.soft 2025-09 conditional novelty 6.0

    Ferritin diffusion in polymer crowder solutions follows a c*-normalized non-monotonic curve with a crossover near 2c*, attributed to depletion-induced intermediate-range order that bulk viscosity cannot explain.