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arxiv: 1109.5474 · v1 · pith:VX4Z3JCPnew · submitted 2011-09-26 · ❄️ cond-mat.soft · physics.bio-ph· physics.comp-ph· q-bio.BM

Hidden complexities in the unfolding mechanism of a cytosine-rich DNA strand

classification ❄️ cond-mat.soft physics.bio-phphysics.comp-phq-bio.BM
keywords unfoldingcytosine-richdynamicshiddenarisesbehaviorcollectivecomplex
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We investigate the unfolding pathway of a cytosine-rich DNA hairpin structure via Molecular Dynamics simulations. Our results indicate a hidden complexity present in the unfolding process. W e show that this complex behavior arises due to non-stochastic contributions which have an important impact on the description of the dynamics in terms of collective variables.

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