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arxiv: physics/0301028 · v1 · submitted 2003-01-14 · ⚛️ physics.bio-ph · cond-mat.soft· physics.class-ph· q-bio

Writhing Geometry of Open DNA

classification ⚛️ physics.bio-ph cond-mat.softphysics.class-phq-bio
keywords allowsexperimentsgeometryopenprocessrecentwrithewrithing
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Motivated by recent experiments on DNA torsion-force-extension characteristics we consider the writhing geometry of open stiff molecules. We exhibit a cyclic motion which allows arbitrarily large twisting of the end of a molecule via an activated process. This process is suppressed for forces larger than femto-Newtons which allows us to show that experiments are sensitive to a generalization of the Calugareanu-White formula for the writhe. Using numerical methods we compare this formulation of the writhe with recent analytic calculations.

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