A systematic approach maps any-dimensional invariant functions to a unique function on an infinite-dimensional limit space admitting a topology with compact sets where universality holds, with examples of non-universal architectures and fixes.
hub Mixed citations
How Powerful are Graph Neural Networks?
Mixed citation behavior. Most common role is background (56%).
abstract
Graph Neural Networks (GNNs) are an effective framework for representation learning of graphs. GNNs follow a neighborhood aggregation scheme, where the representation vector of a node is computed by recursively aggregating and transforming representation vectors of its neighboring nodes. Many GNN variants have been proposed and have achieved state-of-the-art results on both node and graph classification tasks. However, despite GNNs revolutionizing graph representation learning, there is limited understanding of their representational properties and limitations. Here, we present a theoretical framework for analyzing the expressive power of GNNs to capture different graph structures. Our results characterize the discriminative power of popular GNN variants, such as Graph Convolutional Networks and GraphSAGE, and show that they cannot learn to distinguish certain simple graph structures. We then develop a simple architecture that is provably the most expressive among the class of GNNs and is as powerful as the Weisfeiler-Lehman graph isomorphism test. We empirically validate our theoretical findings on a number of graph classification benchmarks, and demonstrate that our model achieves state-of-the-art performance.
hub tools
citation-role summary
citation-polarity summary
claims ledger
- abstract Graph Neural Networks (GNNs) are an effective framework for representation learning of graphs. GNNs follow a neighborhood aggregation scheme, where the representation vector of a node is computed by recursively aggregating and transforming representation vectors of its neighboring nodes. Many GNN variants have been proposed and have achieved state-of-the-art results on both node and graph classification tasks. However, despite GNNs revolutionizing graph representation learning, there is limited understanding of their representational properties and limitations. Here, we present a theoretical f
co-cited works
representative citing papers
Hyperdimensional fingerprints use algebraic operations on high-dimensional vectors to create training-free molecular representations that preserve similarity better than Morgan fingerprints at low dimensions and improve downstream tasks like property prediction and Bayesian optimization.
Gauge-equivariant graph neural networks embed non-Abelian local symmetries directly into message passing for lattice gauge theories, enabling learning of nonlocal observables from local operations.
BadImplant is the first multi-targeted backdoor attack on GNN graph classification that uses subgraph injection to achieve high success rates on multiple target labels with minimal clean accuracy loss.
k-WL is incomplete on simple spectrum graphs; PRiSM is the first provably complete canonicalization for their eigendecompositions.
ConTact decomposes CDR design into surface fingerprint learning, contact prediction, and contact-gated sequence generation using distance-biased attention and weighted loss, reporting 7% RMSD and 10% F1 gains on CHIMERA-Bench.
Introduces the 1GC-7RC benchmark to evaluate AI coding agents on seven diverse ML tasks under single-GPU time and access constraints.
MSRL represents trajectory segments as PSD matrices to prove additive composition properties and bootstrap value functions for better transfer, reaching 0.73 AUC versus 0.57-0.65 baselines.
scShapeBench supplies synthetic and real annotated single-cell datasets across four shape categories, with scReebTower outperforming PAGA and Mapper on topology-aware metrics.
TopoU-Net is a rank-path U-Net for combinatorial complexes that encodes by lifting cochains upward along incidences, decodes by transporting downward, and merges via skip connections at matched ranks.
CTQWformer fuses continuous-time quantum walks into a graph transformer and recurrent module to outperform standard GNNs and graph kernels on classification benchmarks.
SoftBlobGIN combines ESM-2 representations with protein contact graphs via a lightweight GNN and differentiable substructure pooling to achieve 92.8% accuracy on enzyme classification, raise binding-site AUROC to 0.983, and generate auditable structural explanations without retraining the language模型
A gauge-invariant GNN using Wilson loops as inputs accurately predicts observables and simulates dynamics in Z2 and U(1) lattice gauge models.
LUMINA-Bench is a standardized evaluation framework for ACOPF surrogate models that tests generalization across multiple grid topologies using accuracy and physics-constraint metrics.
PiGGO integrates a learned graph neural ODE as the continuous-time dynamics model within an extended Kalman filter to enable online virtual sensing and uncertainty-aware state estimation for nonlinear dynamic systems with unknown model form and sparse sensing.
TF-LLMER resolves optimization barriers in LLM-enhanced recommenders through embedding normalization and Rec-PCA that aligns semantic representations with collaborative co-occurrence graphs.
Concept Graph Convolutions perform message passing on node concepts to increase interpretability of graph neural networks without losing task performance.
A tri-view information-bottleneck model that fuses pairwise, triadic and tetradic O-information outperforms eleven baselines on four fMRI psychiatric datasets while revealing region-level synergy-redundancy patterns.
PROVFUSION fuses three complementary views of provenance data with lightweight schemes and voting to achieve higher detection accuracy and lower false positives than node- or edge-only baselines on nine benchmarks.
R2G is a multi-view circuit graph benchmark showing that representation choice affects GNN accuracy more than model architecture, with node-centric views and deeper decoders performing best.
ToGRL learns high-quality graph structures from raw heterogeneous graphs via a two-stage topology extraction process and prompt tuning, outperforming prior methods on five datasets.
DSBD distills a dual-aligned structural basis to adapt GNNs across graphs with structural distribution shifts, outperforming prior methods on benchmarks.
Complex-valued GNNs using phase-equivariant activations achieve global basis invariance for distributed planar control, outperforming real-valued baselines in data efficiency, tracking, and generalization on flocking.
GraphScout trains LLMs to autonomously synthesize structured training data from knowledge graphs via flexible exploration tools, enabling a 4B model to outperform larger LLMs by 16.7% on average with fewer inference tokens and strong cross-domain transfer.
citing papers explorer
-
DSBD: Dual-Aligned Structural Basis Distillation for Graph Domain Adaptation
DSBD distills a dual-aligned structural basis to adapt GNNs across graphs with structural distribution shifts, outperforming prior methods on benchmarks.
-
Do Larger Models Really Win in Drug Discovery? A Benchmark Assessment of Model Scaling in AI-Driven Molecular Property and Activity Prediction
A benchmark across 156 comparisons finds classical ML models win 116 times while larger pretrained and LLM models win far fewer, showing predictive performance depends on model-task fit rather than scale.
-
On Improving Graph Neural Networks for QSAR by Pre-training on Extended-Connectivity Fingerprints
Pre-training GNNs on ECFP prediction produces statistically significant QSAR gains on five of six Biogen benchmarks with OOD splits, but underperforms on heterogeneous datasets and complex endpoints like binding affinity.