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Bloch-Redfield equations for modeling light-harvesting complexes

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arxiv 1408.2726 v2 pith:ELDXTMCD submitted 2014-08-07 physics.bio-ph physics.chem-phquant-ph

Bloch-Redfield equations for modeling light-harvesting complexes

classification physics.bio-ph physics.chem-phquant-ph
keywords noisebloch-redfieldequationsstrengthcomplexesmodelmodelingphysical
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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We challenge the misconception that Bloch-Redfield equations are a less powerful tool than phenomenological Lindblad equations for modeling exciton transport in photosynthetic complexes. This view predominantly originates from an indiscriminate use of the secular approximation. We provide a detailed description of how to model both coherent oscillations and several types of noise, giving explicit examples. All issues with non-positivity are overcome by a consistent straightforward physical noise model. Herein also lies the strength of the Bloch-Redfield approach because it facilitates the analysis of noise-effects by linking them back to physical parameters of the noise environment. This includes temporal and spatial correlations and the strength and type of interaction between the noise and the system of interest. Finally we analyze a prototypical dimer system as well as a 7-site Fenna-Matthews-Olson (FMO) complex in regards to spatial correlation length of the noise, noise strength, temperature and their connection to the transfer time and transfer.

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