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Microscopic and stochastic simulations of chemically active droplets

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arxiv 2406.14256 v2 pith:X7WWCCKK submitted 2024-06-20 cond-mat.soft cond-mat.stat-mechphysics.bio-ph

classification cond-mat.softcond-mat.stat-mechphysics.bio-ph
keywords activedropletschemicallymicroscopicdynamicsequilibriuminteractionsmodels
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Biomolecular condensates play a central role in the spatial organization of living matter. Their formation is now well understood as a form of liquid-liquid phase separation that occurs very far from equilibrium. For instance, they can be modeled as active droplets, where the combination of molecular interactions and chemical reactions result in microphase separation. However, so far, models of chemically active droplets are spatially continuous and deterministic. Therefore, the relationship between the microscopic parameters of the models and some crucial properties of active droplets (such as their polydispersity, their shape anisotropy, or their typical lifetime) is yet to be established. In this work, we address this question computationally, using Brownian dynamics simulations of chemically active droplets: the building blocks are represented explicitly as particles that interact with attractive or repulsive interactions, depending on whether they are in a droplet-forming state or not. Thanks to this microscopic and stochastic view of the problem, we reveal how driving the system away from equilibrium in a controlled way determines the fluctuations and dynamics of active emulsions.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Active droplets controlled by enzymatic reactions

    cond-mat.soft 2024-11 conditional novelty 6.0 of 10

    In coarse-grained simulations, the number and steady-state size of protein droplets are selected by the concentration and diffusivity of two antagonistic enzyme populations, because growth is interrupted by encounters...

  2. Arrested Ostwald Ripening in Non-Equilibrium Systems

    physics.bio-ph 2025-07 conditional novelty 4.0 of 10

    Random identity swaps or momentum kicks between two particle states arrest Ostwald ripening and stabilize small droplets across several Lennard-Jones-type interaction potentials.

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