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Augmenting Genetic Algorithms with Deep Neural Networks for Exploring the Chemical Space

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arxiv 1909.11655 v4 pith:GWVMEAY4 submitted 2019-09-25 cs.NE cs.LGphysics.chem-phphysics.comp-ph

Augmenting Genetic Algorithms with Deep Neural Networks for Exploring the Chemical Space

classification cs.NE cs.LGphysics.chem-phphysics.comp-ph
keywords geneticalgorithmalgorithmschemicaldesignmoleculesneuraloptimization
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Challenges in natural sciences can often be phrased as optimization problems. Machine learning techniques have recently been applied to solve such problems. One example in chemistry is the design of tailor-made organic materials and molecules, which requires efficient methods to explore the chemical space. We present a genetic algorithm (GA) that is enhanced with a neural network (DNN) based discriminator model to improve the diversity of generated molecules and at the same time steer the GA. We show that our algorithm outperforms other generative models in optimization tasks. We furthermore present a way to increase interpretability of genetic algorithms, which helped us to derive design principles.

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Cited by 1 Pith paper

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score.

  1. Adopting Reinforcement Learning with Verifiable Rewards for Molecular Generation

    cs.LG 2026-07 reject novelty 4.0

    LLMol fine-tunes an LLM on simplified SELFIES and uses GRPO with RDKit-derived rewards for targeted molecular generation, but its own benchmark tables contradict the claimed state-of-the-art performance.