INDEX
Every paper Pith has read and judged, in one searchable index.
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q-bio.NC arXiv submitted 2026-05-16Crystalline codes give 100x hippocampal memory capacity
Prashant C. Raju · “Geometric Phase Transition Enables Extreme Hippocampal Memory Capacity”
2605.17199 -
q-bio.PE arXiv submitted 2026-05-15Stochastic timing boosts growth in first-passage branching
Aanjaneya Kumar +1 · “Branching under First-Passage Resetting”
2605.16693 -
physics.bio-ph arXiv submitted 2026-05-15Simple feedback law optimizes albatross soaring in real time
Simone Martini +2 · “Universal Extremum Seeking Mechanism for Lift Variation in Soaring Birds Flight: A New Paradigm in Computational Physics and Biology”
2605.20232 -
physics.bio-ph arXiv submitted 2026-05-15Minimal feedback law replicates albatross soaring trajectories
Simone Martini +2 · “Universal Extremum Seeking Mechanism for Lift Variation in Soaring Birds Flight: A New Paradigm in Computational Physics and Biology”
2605.20232 -
cond-mat.soft arXiv submitted 2026-05-15Simulations tie ADC conjugation choices to function
Alberto Ocana +1 · “Biophysical Considerations for Rational Antibody and ADC Design”
2605.16070 -
quant-ph arXiv submitted 2026-05-15NDC turns thermodynamic networks into universal function approximators
Patryk Lipka-Bartosik +5 · “Thermodynamic Networks: Harnessing Non-Equilibrium Steady States for Computation”
2605.15985 -
physics.bio-ph arXiv submitted 2026-05-15Clock since last whiff teaches Q-agent to surge
Marco Rando +3 · “Clock-state olfactory search in turbulent flows using Q-learning: The geometry of plume recovery”
2605.15938 -
cond-mat.soft arXiv submitted 2026-05-15Actin cross-linking confines basal bodies for uniform cilia pattern
Raghavan Thiagarajan +4 · “Actin cross-linking organizes basal body patterning through anomalous diffusion transitions”
2605.15912 -
q-bio.CB arXiv submitted 2026-05-15Limit cycles sweep through rare Turing pattern regimes
Seyoon Kim +2 · “How nature discovers rare Turing islands: exploration by common limit cycles”
2605.15839 -
cond-mat.soft arXiv submitted 2026-05-14Actin rate rise triggers flocking transition in cell model
Calvin C. Bakker +3 · “Multiscale order, flocking and phenotypic hysteresis in the cellular Potts model of epithelia”
2605.15159 -
physics.bio-ph arXiv submitted 2026-05-14Lanternfly nymphs use capillary rectifier
Nami Ha +6 · “A developmental switch from capillary rectification to elastic catapult enables honeydew ejection in the spotted lanternfly”
2605.14957 -
cond-mat.soft arXiv submitted 2026-05-14Chromatin fibers steer phase-separated droplets via wetting
L\'ea Beaul\`es +3 · “A Brownian dynamics study of liquid-liquid phase separation in multi-scale chromatin networks”
2605.14516 -
q-bio.CB arXiv submitted 2026-05-13Nutrient depletion separates sibling bacterial colonies
Dario Buonomo +4 · “Kin-ematic Exclusion in Active Matter: Modelling Mutual Inhibition in \textit{Pseudomonas aeruginosa} Sibling Colonies”
2605.13927 -
physics.bio-ph arXiv submitted 2026-05-13Hyperbolic law governs cell cycle slowdown in early embryos
Adri\'an Aguirre-Tamaral +6 · “A hyperbolic cell cycle law for early embryonic developmental timing”
2605.13234 -
physics.bio-ph arXiv submitted 2026-05-13Variational rule builds diffuse models of moving surfaces
Xinpeng Xu · “Onsager-variational formulation of diffuse-domain methods for computational modeling of microscale fluid-structure interactions”
2605.13196 -
physics.bio-ph arXiv submitted 2026-05-13Onsager principle yields unified diffuse-domain models for interfaces
Xinpeng Xu · “Onsager-variational formulation of diffuse-domain methods for computational modeling of microscale fluid-structure interactions”
2605.13196 -
q-bio.CB arXiv submitted 2026-05-133D model checks if cell division rules build plant symmetry
Naoya Kamamoto +1 · “3D mechano-geometric multicellular model of apical stem cell-driven plant morphogenesis”
2605.13070 -
q-bio.PE arXiv submitted 2026-05-13Time discard rule orders population behavior for free
Riccardo Ravasio +6 · “Conditioning as a route to stereotyped behavior in growing populations”
2605.13009 -
physics.bio-ph arXiv submitted 2026-05-12Beverage waste drives top mycoprotein growth rates
Mason Banks +5 · “Kinetics of Mycoprotein Production from Alternative Carbon Substrates”
2605.12409 -
cond-mat.soft arXiv submitted 2026-05-12Cell divisions suppress avalanches in tissue rearrangements
Ali Tahaei +2 · “Cell divisions suppress dynamical correlations in solid tissues”
2605.12109 -
physics.optics arXiv submitted 2026-05-12SLM phase masks emulate real scattering
Kelsey Everts +2 · “Towards digital phantoms: emulating scattering with a spatial light modulator”
2605.11918 -
cond-mat.soft arXiv submitted 2026-05-12Acoustic force quantifies single-condensate viscoelasticity
Kichitaro Nakajima +15 · “Tracer-free Contactless Acoustic Microrheometry Quantifies Viscoelastic Spectrum of Phase-separated Condensates”
2605.11660 -
cond-mat.dis-nn arXiv submitted 2026-05-11Neural-ODEs enforce exact fixed points without losing approximation power
Feliciano Giuseppe Pacifico +5 · “Exact Fixed-Point Constraints in Neural-ODEs with Provable Universality”
2605.10613 -
physics.bio-ph arXiv submitted 2026-05-1140% fewer backbone-water bonds
Y. Ricardo Espinosa +2 · “Urea-Mediated Solvent Reorganization of Bovine Serum Albumin in an Acid-Induced Expanded Conformation at pH 3.7”
2605.10444 -
physics.bio-ph arXiv submitted 2026-05-11Urea swaps water in BSA shell then lets it return
Y. Ricardo Espinosa +2 · “Urea-Mediated Solvent Reorganization of Bovine Serum Albumin in an Acid-Induced Expanded Conformation at pH 3.7”
2605.10444 -
q-bio.PE arXiv submitted 2026-05-11Persistence speeds one bacterial invasion wave but not the reverse
Diego Manso Anda +1 · “Travelling waves of invasion in microbial communities with phenotypic switching”
2605.10420 -
physics.bio-ph arXiv submitted 2026-05-10Mobile nuclei shuttle signals like pigeon post in slime mold
Johnny Tong +5 · “Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell”
2605.09704 -
cond-mat.stat-mech arXiv submitted 2026-05-09Theory optimizes molecular machine designs via flow networks
Ying-Jen Yang +1 · “Nonequilibrium Theory for Molecular Machine Design”
2605.09105 -
q-bio.BM arXiv submitted 2026-05-09BP180 homotrimer model stays folded in simulations
Congzhou M Sha · “A putative, computationally stable structure of homotrimeric BP180/collagen XVII”
2605.08953 -
cond-mat.soft arXiv submitted 2026-05-09Insertion depth drives concentration-dependent bilayer destabilization
Anirban Polley · “Concentration-Dependent Membrane Destabilization in DPPC Bilayers: Distinct Insertion Mechanisms and Stress Redistribution by Chloroform and Alkanols”
2605.08780 -
physics.bio-ph arXiv submitted 2026-05-08Acidic byproducts from sugars limit S
Samina Masood +2 · “Growth Dynamics of S. aureus with Sugars and Sugar Alcohols in Weak Magnetic Fields”
2605.08469 -
physics.bio-ph arXiv submitted 2026-05-08CISS spin filter curbs triplets in heliobacterial photosynthesis
Parul Raghuvanshi +1 · “Chiral-Induced Spin Selectivity Regulates Triplet formation in Heliobacterial Photosynthesis”
2605.08307 -
physics.bio-ph arXiv submitted 2026-05-08CISS suppresses triplet formation in heliobacterial photosynthesis
Parul Raghuvanshi +1 · “Chiral-Induced Spin Selectivity Regulates Triplet formation in Heliobacterial Photosynthesis”
2605.08307 -
physics.bio-ph arXiv submitted 2026-05-08Cells crawl best at intermediate substrate stiffness
Sohei Nakamura +1 · “Cellular-scale mechanism of cell crawling responding to substrate stiffness”
2605.07109 -
physics.bio-ph arXiv submitted 2026-05-08Functionalized microelectrodes sense lactate at 10 nM
Amish Rohtagia +7 · “Indirect Detection of Lactate Through Voltammetry Using Glassy Carbon Microelectrodes”
2605.08264 -
q-bio.CB arXiv submitted 2026-05-07Extrinsic noise required to explain E
Mattia Corigliano (1 +19 · “Essential Role of Extrinsic Noise in Models of E. coli Division Control”
2605.07007 -
physics.bio-ph arXiv submitted 2026-05-07Polarization revives to 0.8 in realistic axon models
Ethan Davies +2 · “Modeling Optical Polarization Evolution in Myelinated Axon Waveguides with Realistic Imperfections”
2605.15211 -
physics.bio-ph arXiv submitted 2026-05-07Axon models recover polarization fidelity to 0.8 with combined imperfections
Ethan Davies +2 · “Modeling Optical Polarization Evolution in Myelinated Axon Waveguides with Realistic Imperfections”
2605.15211 -
physics.soc-ph arXiv submitted 2026-05-07Climate anomalies synchronize dengue outbreaks across Brazilian cities
Enrique C. Gabrick +4 · “Climate and dengue synchronization in southern Brazil: a municipal analysis with cross-state validation”
2605.06888 -
cond-mat.stat-mech arXiv submitted 2026-05-07Subdiffusion arises from projecting structured particle dynamics
Patrick BarAvi · “Anomalous Diffusion as Structural Memory: An Extended Structural Dynamics Approach”
2605.16337 -
cond-mat.soft arXiv submitted 2026-05-06Condensin reverses DNA loops via catch-bond intermediate
Atreya Dey +3 · “Loop Extrusion Reversal by Condensin Motor is Mediated by Catch Bonds”
2605.04482 -
physics.bio-ph arXiv submitted 2026-05-06Delay alone creates chimera states then waves in neuron networks
Hui Wu · “Delay-induced chimera transitions via mode selection in a multiplex FitzHugh Nagumo network”
2605.04430 -
q-bio.PE arXiv submitted 2026-05-05Genotype decides if heterogeneity amplifies or suppresses selection
Hossein Nemati +4 · “Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments”
2605.04339 -
cond-mat.soft arXiv submitted 2026-05-05Minimal model predicts tracer motion in crowded cells
Jinseok Lee +3 · “A framework for modeling and inferring tracer diffusion in crowded environments”
2605.04216 -
physics.bio-ph arXiv submitted 2026-05-05Stochastic model predicts worm locomotion from neural signals
Alexander E. Cohen +1 · “Predicting and controlling nonlinear neuro-mechanical locomotion dynamics”
2605.03362 -
physics.bio-ph arXiv submitted 2026-05-04Incommensurable costs fix vascular branching exponents
Riccardo Marchesi · “The Incommensurability Principle in Biological Transport”
2605.03219 -
physics.bio-ph arXiv submitted 2026-05-04Vascular branching exponent fixed at 2.626 by topology alone
Riccardo Marchesi · “The Incommensurability Principle in Biological Transport”
2605.03219 -
physics.bio-ph arXiv submitted 2026-05-04Cells transmit molecular info to population size best at intermediate division steps
Krishna P. Ramachandran +3 · “Optimal information transmission in a sequential model for cell division”
2605.03173 -
cond-mat.soft arXiv submitted 2026-05-04Rod shape and density dictate swarming
Yogesh Shelke +2 · “Shape anisotropy governs organization of active rods: Swarming, turbulence, flocking, and jamming”
2605.02590 -
math.DS arXiv submitted 2026-05-03EML operator yields single-block overshoot modules for biology models
Amir Erez · “Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics”
2605.02972