INDEX
Every paper Pith has read and judged, in one searchable index.
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physics.bio-ph arXiv submitted 2019-07-25Comb model of neurons yields Richardson diffusion
Alexander Iomin · “Richardson diffusion in neurons”
1907.10944 -
physics.bio-ph arXiv submitted 2019-07-24Droplet size switches actomyosin center from middle to edge
Niv Ierushalmi +6 · “Centering and symmetry breaking in confined contracting actomyosin networks”
1907.10642 -
q-bio.CB arXiv submitted 2019-07-24Basolateral fluids shape tissues by controlling hydration
Markus Schliffka +1 · “Stay hydrated: Basolateral fluids shaping tissues”
1907.10319 -
cond-mat.soft arXiv submitted 2019-07-24DNA sequence design programs droplet temperature and dynamics
Yusuke Sato +2 · “Sequence design-based control of DNA droplets formed from phase separation of DNA nanostructures”
1907.10252 -
physics.app-ph arXiv submitted 2019-07-23Slow curing embeds active biomolecules in PDMS matrix
Greta Faccio +7 · “Complete inclusion of bioactive molecules and particles in polydime-thylsiloxane: a straightforward process under mild conditions”
1907.09710 -
physics.bio-ph arXiv submitted 2019-07-19Force feedback works in pulling but overestimates in fast hopping
Marc Rico-Pasto +2 · “Force Feedback Effects on Single Molecule Hopping and Pulling Experiments”
1907.08444 -
physics.bio-ph arXiv submitted 2019-07-18Future visual maximization produces animal-like swarms
Henry J. Charlesworth +1 · “Intrinsically motivated collective motion”
1907.08097 -
cond-mat.mes-hall arXiv submitted 2019-07-171% strain doubles ion conductance through graphene pores
Subin Sahu +3 · “Optimal transport and colossal ionic mechano-conductance in graphene crown ethers”
1907.07683 -
physics.flu-dyn arXiv submitted 2019-07-16Three chemical patches optimize phoretic pump flow universally
Sebastien Michelin +1 · “Universal optimal geometry of minimal phoretic pumps”
1907.06839 -
physics.bio-ph arXiv submitted 2019-07-15Filament lengths create optimal cargo trapping zones in cells
Bryan Maelfeyt +1 · “Cytoskeletal filament length controlled dynamic sequestering of intracellular cargo”
1907.06329 -
physics.med-ph arXiv submitted 2019-07-13Averaged Fisher info yields objective optimal dMRI designs
Santiago Coelho +3 · “Optimal experimental design for biophysical modelling in multidimensional diffusion MRI”
1907.06139 -
q-bio.PE arXiv submitted 2019-07-12Movement realism alters predicted animal encounter rates
Ricardo Martinez-Garcia +4 · “How range residency and long-range perception change encounter rates”
1907.05902 -
physics.bio-ph arXiv submitted 2019-07-12UVC kills 97 percent of skin bacteria without harm
Ch. Jalbout +1 · “Advancement study in skin bacteria protection using UV light”
1907.05675 -
physics.bio-ph arXiv submitted 2019-07-12Lateral voltages alter ion channel activity in artificial bilayers
Maki Komiya +15 · “A Teflon-based system for applying multidirectional voltages to lipid bilayers as a novel platform for membrane proteins”
1907.05643 -
physics.bio-ph arXiv submitted 2019-07-11Noise makes biological strategies suboptimal for artificial sensors
Tuhin Chakrabortty +1 · “Theoretical Limit Of Concentration Sensing of Single Receptor Artificial Biosensors”
1907.05349 -
physics.med-ph arXiv submitted 2019-07-10Two-step equilibrium labeling matches kinetic proofreading error reduction
Tuhin Chakrabortty +1 · “Error reduction in biosensors using secondary labeling”
1907.04516 -
physics.optics arXiv submitted 2019-07-08ZMW apertures extend smFRET to 13.6 nm
Mikhail Baibakov +5 · “Extending Single Molecule F\"orster Resonance Energy Transfer (FRET) Range Beyond 10 Nanometers in Zero-Mode Waveguides”
1907.03734 -
physics.comp-ph arXiv submitted 2019-07-08Neural network GSFE rivals atomic potentials on decoy detection
Shiyang Long +1 · “A simple neural network implementation of generalized solvation free energy for assessment of protein structural models”
1907.04914 -
q-bio.BM arXiv submitted 2019-07-07BSPA reconstructs protein structures from seconds of liquid imaging
Gabriele Marchello +4 · “4D Liquid-phase Electron Microscopy of Ferritin by Brownian Single Particle Analysis”
1907.03348 -
physics.bio-ph arXiv submitted 2019-07-05Two conditions let cells assemble many protein complexes reliably
Pablo Sartori +1 · “Towards a theory of assembly of protein complexes: lessons from equilibrium statistical physics”
1907.02992 -
cond-mat.soft arXiv submitted 2019-07-04DFT skin model identifies lipid-amino acid coupled vibrations
Erika T. Sato +4 · “An Atomistic First-Principles Density Functional Theory Model for Single Layer Dry \textit{Stratum Corneum}”
1907.02590 -
physics.med-ph arXiv submitted 2019-07-02Review updates methods for microvascular blood flow imaging
Cerine Lal +1 · “An Updated Review of Methods and Advancements in Microvascular Blood Flow Imaging”
1907.01629 -
cond-mat.stat-mech arXiv submitted 2019-07-02Minimal KL rate bounds power to maintain nonequilibrium Markov distribution
Dmitri S. Pavlichin +2 · “Minimum Power to Maintain a Nonequilibrium Distribution of a Markov Chain”
1907.01582 -
physics.bio-ph arXiv submitted 2019-07-02DHA domains boost nAChR dimerization tenfold at low density
Kristen Woods +2 · “Untangling direct and domain-mediated interactions between nicotinic acetylcholine receptors in DHA-rich membranes”
1907.01510 -
physics.app-ph arXiv submitted 2019-06-30Fresnel rings on flat pistons create converging vortex acoustic waves
Kapil Dev +3 · “Analytical Modeling and Design of Fresnel Lens Transducers”
1907.09339 -
physics.chem-ph arXiv submitted 2019-06-29Hydration free energies shrink with larger simulation boxes
D. Asthagiri +1 · “System size dependence of hydration shell occupancy”
1907.00238 -
q-bio.PE arXiv submitted 2019-06-29Different nutrient ratios create multiple stable microbe states
Veronika Dubinkina +3 · “Multistability and regime shifts in microbial communities explained by competition for essential nutrients”
1907.01380 -
physics.app-ph arXiv submitted 2019-06-28Virus surface packing triggers fluorescence brightening under pulses
Irina B. Tsvetkova +4 · “Radiation Brightening from Virus-like Particles”
1907.00065 -
physics.bio-ph arXiv submitted 2019-06-24Oxygen drop from bacteria drives worm swarms via phase separation
Esin Demir +2 · “Dynamics of pattern formation and emergence of swarming in C. elegans”
1906.10067 -
q-bio.BM arXiv submitted 2019-06-24Sequence data lets one framework span residue to family coevolution
Hendrik Szurmant +1 · “Inter-residue, inter-protein and inter-family coevolution: bridging the scales”
1906.09881 -
q-bio.MN arXiv submitted 2019-06-24Two miRNA channels required for early muscle differentiation
Jonathan Fiorentino +1 · “Independent channels for miRNA biosynthesis ensure efficient static and dynamic control in the regulation of the early stages of myogenesis”
1906.09861 -
physics.bio-ph arXiv submitted 2019-06-24Nonlinear coupling of brain waves produces rhythms orders of magnitude slower
Vitaly L. Galinsky +1 · “Universal mechanism of low-frequency brain rhythm formation through nonlinear coupling of high-frequency spiking-like activity”
1906.09716 -
physics.bio-ph arXiv submitted 2019-06-21Minimal models identify forces behind cellular self-organisation
Anne E. Hafner +2 · “Minimal coarse-grained models for molecular self-organisation in biology”
1906.09349 -
q-bio.NC arXiv submitted 2019-06-21D1 receptors stabilize brain states during working memory
Urs Braun +17 · “Brain state stability during working memory is explained by network control theory, modulated by dopamine D1/D2 receptor function, and diminished in schizophrenia”
1906.09290 -
q-bio.CB arXiv submitted 2019-06-21Focal adhesion growth explains why cells spread on stiff substrates
Elisabeth G. Rens +1 · “Cell Shape and Durotaxis Follow from Mechanical Cell-Substrate Reciprocity and Focal Adhesion Dynamics: A Unifying Mathematical Model”
1906.08962 -
physics.bio-ph arXiv submitted 1999-12-29Helical twist flips DNA force from attraction to repulsion
E.Allahyarov +1 · “Effective interaction between helical bio-molecules”
physics/9912053