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Every paper Pith has read. Search by title, abstract, or pith.
301 papers in physics.bio-ph · page 3
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Mixed alignment and anti-alignment rules destroy long-range flocking order
Mesoscopic theory of flocking with alignment and anti-alignment copying
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Dynamical Bayesian model reproduces order biases in touch perception
Modelling time-order effects in haptic perception with a Bayesian dynamical framework
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Semiquinone destabilizes loops in robin cryptochrome
Distinct Structural Dynamics of the Semiquinone State Define a Signalling Pathway in Avian Cryptochrome
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Polymer replication peaks in info-per-energy at specific alphabet size
Information-to-energy trade-offs and the optimal alphabet of polymer replication
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Staggered frequency lattice enables scan-free 2D light patterns
Fast projections of two-dimensional light patterns using acousto-optical deflectors
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Stingless bee hives yield graphene sheets with blue light emission
Discovery of Graphene Sheets and C-Rich Micro-Oval structure in Stingless Bee Hive; Leading to an Emergent Material with Debut of Blue Emission
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Digital fabrication enables local research-grade optics
Advancing optical imaging systems with digital fabrication
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Low molecule counts mask weak contacts in cell collisions
Intrinsic stochasticity in cell polarity and contact inhibition of locomotion
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Noise switches frustrated genes to set cell differentiation timing
Noise-Driven Differentiation via Gene Frustration and Epigenetic Fixation
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Cortical flows alone form the equatorial ring that pinches dividing cells
From Flow to Form: Emergence of the Cytokinetic Ring via Active Cortical Dynamics
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Dipeptides trigger spontaneous condensation with RNA
Deciphering the chemical grammar of protein-RNA condensates
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Phase transition sets strict lower bound on stable plasmid numbers
Phase transitions in microbial lineage trees
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Physical differences become meaningful states in protocell clusters
From Physical Difference to Meaning: A Constructor-Theoretic Framework for Prebiotic Information in Casimir-Lifshitz-Coupled Protocell Clusters
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Chloride influx fraction sets seizure stage transitions
Role of chloride concentration in modulating seizure transitions in excitatory and inhibitory networks
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Leak term in RNNs yields regular grids and better path integration
Impact of leaky dynamics on predictive path integration accuracy in recurrent neural networks
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Chromatin loops follow universal size law set by barriers
Universal Loop Statistics from Active Extrusion with Kinetic Barriers
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Voronoi cell model shows diverging detachment forces
Divergence of detachment forces in the finite Voronoi model
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Fractal structure localizes oxygen in tumors
Fractal geometry-governed oxygen diffusion: Tumors vs. Normal Tissues
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Reduced model predicts 2D front blocking by obstacles
Blocking of 2D bistable reaction-diffusion fronts by obstacles
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Plasmon resonance enlarges bacterial membrane contact area
Deformation of Bacterial Cell Membranes by Action of Metal Surface under Plasmon Resonance Condition
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Asymmetric particles self-propel under uniform light via refraction
Self-propelled particles driven by light
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Ligands destabilize different stems in threaded vs unthreaded viral RNA
Unraveling the Mechanism of Drug Binding to SARS-CoV-2 RNA Pseudoknot with Thermodynamics-Driven Machine Learning
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Albatross trajectories lie closest to wind-shear effort bound
Seabird trajectories map onto a reduced optimal-control bound for dynamic soaring
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Two-parameter model reproduces power-law gene and exponential genome degrees
A generative model for bipartite gene-sharing networks
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Particle models suit discrete cell features
Beads, springs and fields: particle-based vs continuum models in cell biophysics
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Bayesian workflow calibrates microbubble shell models to force data
Hierarchical Bayesian calibration of mesoscopic models for ultrasound contrast agents from force spectroscopy data
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Bacteria show active gas, liquid, glass and crystal phases
Various phases of active matter emerging from bacteria and their implications
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Tension sets boundary between particle uptake and expulsion
Membrane Tension Governs Particle Wrapping-Unwrapping Transitions and Stalling
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Two Golgi models are phases of one nonequilibrium process
Building and maintaining a System of Intracellular Compartments
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Golgi organization models unified as phases of one nonequilibrium process
Building and maintaining a System of Intracellular Compartments
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Neural network learns family of elastic equilibria across parameters
Learning Parameterized Nonlinear Elasticity on Curved Surfaces
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Leaflet length sets reflux threshold in bicuspid valves
Bicuspid Valve Closure and Backflow Prevention: Role of Leaflet Geometry
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Active matter gives physical account of living dynamics
An active soft condensed matter approach to the Physics of living systems
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Dynamic brain links spread signals farther under equal cost
Dynamic Functional Connectivity Resolves Brain Integration-Segregation Trade-off Under Costly Links
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Exact solutions show low-field effect as coherence in radical pairs
A physicist-friendly primer on the Hamiltonian for quantum sensing in proteins: analytical expressions and insights for a toy model of the radical-pair mechanism
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Soft sphere model matches antibody data from structure alone
A Soft Penetrable Sphere Colloid Model for the Description of Charge and Excluded Volume Interactions in Antibody Solutions
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Wave physics enforces Kleiber's 3/4 metabolic scaling
The Dynamic Origin of Kleiber's Law
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q^{-1} spectrum makes vorticity contours follow percolation
Spectral origin of conformal invariance in active nematic turbulence
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Odors rely on unique molecular features
Heterogeneous Molecular Signatures of Human Odor Perception
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Overlap concentration unifies dextran viscosity and diffusion scaling
Physical Properties of Dextran Solutions as Model Crowding Media
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Entangled photon pairs enable quadratic polarimetry
Quadratic Quantum Polarimetry with Entangled Photon Pairs
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Budding cells jam before all buds are constrained
Theory of post-jamming rigidity in feedback-regulated cellular packings
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Chemical changes tune microtubule quantum yield
Engineering quantum optical responses of microtubules through tryptophan-network simulations and ultraviolet spectroscopy
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Motor binding creates repulsion that stops condensate coarsening
Active Transport as a Mechanism of Microphase Selection in Biomolecular Condensates
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Two optical platforms detect SARS-CoV-2 antibodies label-free
Comparative performance of three optical biosensing platforms for SARS-CoV-2 antibodies detection in human serum
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Plaque modifies double kissing crush stenting results
Influence of Plaque Characteristics on Stent Biomechanical Outcomes - A Case Study on Double Kissing Crush Coronary Stenting
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Bubbles from yeast metabolism let cells escape confining gels
Biogenic bubbles enable microbial escape from physical confinement
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Differentiable vertex models enable tissue mechanics inference
VertAX: a differentiable vertex model for learning epithelial tissue mechanics
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PLGA coating slows burst release from bredigite antibiotic scaffolds
Drug-delivery Ca-Mg silicate scaffolds encapsulated in PLGA
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Resorption rate outweighs drug release in microsphere biocompatibility
Competition of carrier bioresorption and drug release kinetics of vancomycin-loaded silicate macroporous microspheres to determine cell biocompatibility