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INDEX

Every paper Pith has read and judged, in one searchable index.

1,289 reviewed papers in physics.bio-ph · newest first · page 4

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. cond-mat.soft arXiv submitted 2026-07-03
    Excess lipids can crack a vesicle’s round shape

    Sho Kawakami +4 · “Stability and equilibria of a compressible elastic membrane in Stokes flow”

    2607.03357
  2. physics.med-ph arXiv submitted 2026-07-03
    Grey-matter phantoms grown from real cell shapes for MRI

    Charlie Aird-Rossiter +5 · “Contextual Cellular Growth (ConCeG) of neural cells for realistic grey matter tissue generation for diffusion MRI simulations”

    2607.03286
  3. physics.chem-ph arXiv submitted 2026-07-02
    Eighteen of twenty-one enzyme records pass a Haldane audit

    Megan Simons +1 · “Auditing Haldane Consistency in Reversible Enzyme Kinetics: A Curated Two-Sided Backbone and a Labeled Fold-Error Benchmark”

    2607.02784
  4. physics.bio-ph arXiv submitted 2026-07-02
    Under 0.25% of SCS field energy reaches spinal grey matter

    Olivier Bernard +5 · “Electric Field Propagation with Spinal Cord Stimulation”

    2607.02710
  5. physics.flu-dyn arXiv submitted 2026-07-02
    Gliding mammal wing shapes trade lift for control authority

    Liming Zheng +3 · “Patagium and tail morphology shape aerodynamic performance and control authority in gliding-mammal-inspired wings”

    2607.02246
  6. cs.NE arXiv submitted 2026-07-02
    Phase-locked loop yields simple bursting neuron circuit

    Lev V. Takaishvili +3 · “Electronic Bursting Neuron: design, equations and hardware implementation”

    2607.02122
  7. q-bio.QM arXiv submitted 2026-07-02
    Point source restores identifiability of spatial dynamics from snapshots

    Rujie Gu +2 · “Identifiability Limits of Physics-Informed Inference for Spatial Stochastic Dynamics from Static Snapshots”

    2607.01749
  8. cond-mat.soft arXiv submitted 2026-07-01
    Diffuse fronts enhance phoretic removal from dead-end pores

    Amir A. Pahlavan · “Diffusiophoretic transport of colloids and emulsions in complex environments”

    2607.01031
  9. physics.bio-ph arXiv submitted 2026-07-01
    Hydrodynamic flow accelerates Brassica root growth and triggers ROS

    Kaushal Agarwal +2 · “Plant-On-a-Disc (POD): A Phytofluidic platform enabling In Situ Root Analysis”

    2607.00942
  10. physics.bio-ph arXiv submitted 2026-07-01
    Life defined by preserving physical identity at all costs plus a grounded self

    Yehuda Roth · “Identity and Self as Physical Signatures of Life in Dictyostelium and Multicellular Systems”

    2607.00923
  11. physics.bio-ph arXiv submitted 2026-07-01
    Calcium noise narrows Hydra body forms during regeneration

    Oded Agam +1 · “Dynamical noisy canalization in morphogenesis: lessons from Hydra regeneration”

    2607.00823
  12. physics.bio-ph arXiv submitted 2026-07-01
    Vaccine optimization unnecessary when protection routes balance

    Mi Feng +3 · “When is vaccine prioritization worth optimizing?”

    2607.00484
  13. physics.bio-ph arXiv submitted 2026-07-01
    Bilayer model shows edge matching peaks in fluid-like cell sheets

    Troy Singletary +2 · “A bilayer cellular Potts model of epithelial docking”

    2607.00400
  14. q-bio.PE arXiv submitted 2026-06-30
    Senescence mortality matches multi-level selection patterns

    Ananda Shikhara Bhat +1 · “Demographic senescence as multi-level selection in miniature”

    2607.00262
  15. cond-mat.stat-mech arXiv submitted 2026-06-30
    Power-law contacts produce multifractal scaling in Hi-C maps

    Seong-Gyu Yang +3 · “Multifractal Scaling in Hi-C Maps”

    2606.31997
  16. cond-mat.soft arXiv submitted 2026-06-30
    Source-driven droplets form compressive rims at diffusion fronts

    Avraham Moriel +1 · “Nonlinear diffusion and compressive rims in source-driven biopolymer condensates”

    2606.31786
  17. physics.bio-ph arXiv submitted 2026-06-30
    Protein folding friction peaks in the folded state

    Lucas Tepper +6 · “Reaction-Coordinate-Dependent Non-Markovian Friction Governs Protein-Folding Dynamics”

    2607.20504
  18. physics.bio-ph arXiv submitted 2026-06-30
    Bacterial lifetime equals inverse decay rate of identity mode

    Yehuda Roth · “Fock-Space Formulation of the Lifetime of a Unicellular Organism”

    2606.31185
  19. cond-mat.soft arXiv submitted 2026-06-29
    Vertex model stress tensor has freedom in tension distribution

    Paulo C. Godolphim +2 · “Stress tensor field and mesoscopic stresses in the vertex model for tissues”

    2606.30401
  20. q-bio.SC arXiv submitted 2026-06-29
    Clathrin coats develop stiffness and memory from growth conditions

    Johannes H. H. Dreckhoff +3 · “Pathway variability, coat stiffening and mechanical adaptation during clathrin-mediated endocytosis”

    2606.30267
  21. cond-mat.soft arXiv submitted 2026-06-29
    Tumors lose symmetry via buckling and cell-death volume loss

    Luise Zieger +4 · “A phase-field model for viscoelastic compressible tumor growth”

    2606.30041
  22. cond-mat.soft arXiv submitted 2026-06-28
    Anchored magnetic bot chains buckle into sustained flagellar beating

    Francisca Guzm\'an-Lastra +4 · “Emergence of beating in a magnetic flagellum consisting of active bots”

    2606.29499
  23. physics.bio-ph arXiv submitted 2026-06-28
    Subjective time scales with entropy

    Jos\'e Weberszpil +1 · “Entropic Time, Psychophysics, and Deformed Neural Dynamics: A Unified Physical Theory for Human Time Perception”

    2606.29427
  24. physics.bio-ph arXiv submitted 2026-06-28
    Bacterial flows order independently of cell polarity

    Yuhao Wang +4 · “Flow-polarity decoupling and universal mobility enhancement in dense bacterial active fluids with mesoscale order”

    2606.29410
  25. physics.bio-ph arXiv submitted 2026-06-27
    Aging as drift in DNA code coherence parameters

    Yehuda Roth · “Classical Coherence and Biological Aging”

    2606.28838
  26. physics.bio-ph arXiv submitted 2026-06-26
    Microbes generate spontaneous flows to cut cooling energy use

    Nilanjan Mondal +2 · “Engineering Collective Microbial Dynamics for Sustainable Thermal Management”

    2606.28646
  27. math.OC arXiv submitted 2026-06-26
    ILTS-SINDy recovers nonlinear dynamics models from data with up to 20% outliers by first…

    Fabio Amaral +2 · “Robust Sparse Identification of Nonlinear Dynamics via Least Trimmed Squares”

    2606.28584
  28. physics.bio-ph arXiv submitted 2026-06-26
    Variable conditions erase fitness gains from learning egg templates

    Xiao Zhou +1 · “Effect of environmental variation on the benefits of learning”

    2606.28503
  29. cond-mat.stat-mech arXiv submitted 2026-06-26
    Optimal transport fits exact master equations to discrete data

    Chih-Wei Joshua Liu +2 · “Optimal parameterization of nonequilibrium generalized master equations from discrete-time experimental data”

    2606.28289
  30. physics.bio-ph arXiv submitted 2026-06-26
    Compressible turbulence caps Allee strength before extinction

    Jonathan Bauermann +3 · “The Allee Effect in Compressible Flows”

    2606.28260
  31. physics.chem-ph arXiv submitted 2026-06-26
    NanoVer brings live MD simulations into shared XR on commodity headsets

    Mark D. Wonnacott +8 · “NanoVer: An open-source framework for interactive molecular dynamics in extended reality (iMD-XR) on commodity hardware”

    2606.30678
  32. physics.bio-ph arXiv submitted 2026-06-26
    Active mixing boosts plankton carbon uptake and enlarges phycosphere

    Maggie Liu +1 · “Active diffusion enhances plankton carbon capture and phycosphere radius”

    2606.28075
  33. cond-mat.stat-mech arXiv submitted 2026-06-26
    Tsallis q shifts at bilaterian transition in protein lengths

    Sertac Eroglu · “Nonextensive Statistical Signatures of the Bilaterian Transition in Proteome Length Distributions”

    2606.27985
  34. q-bio.PE arXiv submitted 2026-06-26
    Maximum-likelihood paths often atypical of real evolutionary histories

    Roberto Netti +1 · “Reconstructability of evolutionary intermediates in generative epistatic landscapes”

    2606.27983
  35. q-bio.BM arXiv submitted 2026-06-26
    Method adds coevolution to ancestral protein reconstruction

    Alya Zeinaty +5 · “Towards coevolution-aware ancestral sequence reconstruction”

    2606.27942
  36. physics.bio-ph arXiv submitted 2026-06-26
    Self-organized seascapes accelerate relaxation to equilibrium

    Emmy Blumenthal +1 · “Self-organized robustness in mean-field interacting systems”

    2606.27626
  37. cond-mat.soft arXiv submitted 2026-06-25
    Coarse-grained proteins need internal friction to match dynamics

    Carlos Monago +3 · “Unraveling Internal Friction in a Coarse-Grained Protein Model”

    2606.27133
  38. physics.bio-ph arXiv submitted 2026-06-25
    13 amino acids switch bonds to relay protons in channels

    Xiangyu Su +3 · “Efficient Proton Relay Orchestrated by Covalent Bond Switching of Active Amino Acids in Protein Channels”

    2606.27081
  39. q-bio.QM arXiv submitted 2026-06-25
    Energy allocation links scaling exponents to von Bertalanffy growth

    Hana Krakovsk\'a +2 · “Metabolic scaling, von Bertalanffy growth and an exponent equation”

    2606.28418
  40. cond-mat.soft arXiv submitted 2026-06-25
    Elongated cells switch tissues between two solids

    Shao-Zhen Lin +1 · “Solid-to-solid transition in dense assemblies of elongated cells”

    2606.26726
  41. physics.flu-dyn arXiv submitted 2026-06-24
    Fusion and recovery of droplets obey separate mechanisms

    Mohammad Moein Naderi +2 · “Droplet Fusion as a Relaxation Process: Comparison with Shape Recovery of Newtonian and Viscoelastic Droplets”

    2606.26272
  42. physics.bio-ph arXiv submitted 2026-06-24
    Bayesian cell sensing creates density-dependent growth

    Manish Kumar Gupta +2 · “Density-dependent growth emerges from Bayesian adaptation of phenotype”

    2606.25918
  43. physics.bio-ph arXiv submitted 2026-06-24
    Viral capsid height spread traces to stiffness differences

    Yeraldinne Carrasco Salas (Phys-ENS) +6 · “Mechanical control of the height distribution of adsorbed viral capsids”

    2606.25710
  44. q-bio.QM arXiv submitted 2026-06-23
    Neural net recovers phase-field energy terms from snapshots

    Callum Marsh +2 · “Extended pseudo-spectral physics-informed neural networks for phase-field models”

    2606.24660
  45. physics.bio-ph arXiv submitted 2026-06-23
    Intelligent active particles form swarms and predator-prey groups

    Priyanka Iyer +2 · “Emergent Self-Organisation of Intelligent Active Particles”

    2606.24547
  46. cs.RO arXiv submitted 2026-06-23
    RL agents learn universal strategies in blood capillary simulations

    Jannik Drotleff +6 · “Reinforcement Learning Enables Autonomous Microrobot Navigation and Intervention in Simulated Blood Capillaries”

    2606.26154
  47. physics.bio-ph arXiv submitted 2026-06-23
    Crimped fibrils let tendons stretch farther without high strain

    Zoe C. Godard +2 · “Uniaxial poroelastic tendon model with crimped fibre recruitment”

    2606.24393
  48. physics.chem-ph arXiv submitted 2026-06-23
    Causal directions link protein principal components

    Debarshi Banerjee +2 · “Investigating causality between principal components in protein dynamics”

    2606.24283
  49. math.NA arXiv submitted 2026-06-22
    Diagonal Frog schemes preserve nonnegativity in Fokker-Planck equations

    Andrey Itkin · “Diagonal Frog: High-order positivity-preserving FD schemes for anisotropic Fokker-Planck equations”

    2606.23980
  50. cond-mat.stat-mech arXiv submitted 2026-06-22
    Time integration creates hyperuniform scaling in stochastic Turing patterns

    Anirban Mukherjee +1 · “Effective hyperuniformity in time-integrated stochastic Turing patterns”

    2606.23677