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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 8

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. physics.app-ph arXiv submitted 2026-05-03
    Live imaging cuts antiviral testing time by 26 hours

    Merve Eryilmaz +10 · “Continuous quantification of viral plaque dynamics using ultra-large-area label-free imaging enables rapid antiviral susceptibility testing”

    2605.01738
  2. physics.bio-ph arXiv submitted 2026-05-03
    Lumens act as active balloons in organ formation

    Sebastian Echeverr\'ia-Alar +3 · “Lumens as active balloons: a biological physics review”

    2605.01649
  3. cond-mat.stat-mech arXiv submitted 2026-05-02
    Log centroid recovers Kramers scaling until noise boundary in excitable cells

    Yefan Wu · “Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems”

    2605.06692
  4. cond-mat.stat-mech arXiv submitted 2026-05-02
    Log centroid method recovers Kramers scaling in noisy quiescent systems

    Yefan Wu · “Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems”

    2605.06692
  5. cond-mat.stat-mech arXiv submitted 2026-05-02
    Logarithmic method recovers adiabatic scaling in excitable systems

    Yefan Wu · “Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems”

    2605.06692
  6. physics.bio-ph arXiv submitted 2026-05-01
    Pairwise model fits Scrabble graphs and distinguishes languages

    Olivier Witteveen +1 · “Statistical mechanics for Scrabble predicts strategy, entropy and language”

    2605.00813
  7. physics.med-ph arXiv submitted 2026-04-30
    Particle therapy cuts lymphocyte loss by 30% versus photons

    Vladislav Sandul +2 · “Model-aided quantification of patient-specific benefit in mitigating radiation induced lymphopenia by particle therapy of cancer”

    2605.00144
  8. cond-mat.soft arXiv submitted 2026-04-30
    Active phase separation propels colloids indefinitely

    Benjamin Sorkin +1 · “Propelling catalytic structures using active phase separation”

    2604.27965
  9. physics.bio-ph arXiv submitted 2026-04-30
    Neural power cuts entropy per cycle to extend primate lifespan

    Mesfin Taye · “Neural Investment as an Entropy-Budget Strategy: A Thermodynamic Derivation of Primate Longevity from the Principle of Biological Time Equivalence”

    2604.27937
  10. physics.bio-ph arXiv submitted 2026-04-30
    230 species share roughly one billion heartbeats per lifetime

    Mesfin Taye · “The Lifetime Cardiac-Cycle Invariant in Endothermic Vertebrates: A 230-Species Comparative Dataset, Statistical Validation, and Explicit Falsifiability Criteria”

    2604.27856
  11. cond-mat.soft arXiv submitted 2026-04-30
    Cyanobacterial colonies resist lake mixing forces

    Yuri Z. Sinzato +6 · “On Linear and Non-Linear Mechanics of Cyanobacterial Colonies”

    2604.27760
  12. physics.bio-ph arXiv submitted 2026-04-30
    Time delay in gravity response drives root oscillations

    Riz Fernando Noronha +2 · “Delayed control driven oscillations in plant roots”

    2604.27675
  13. physics.bio-ph arXiv submitted 2026-04-30
    Peptides differ in virion confinement near cells

    Philipp Rieder +10 · “Statistical analysis of virion-cell interactions mediated by peptide nanofibrils and peptide amphiphiles using STEM tomography”

    2605.02934
  14. physics.bio-ph arXiv submitted 2026-04-30
    Cell agents recover dose-rate effects without fudge factors

    Francesco G. Cordoni +2 · “A stochastic agent-based extension of the GSM2 model for particle therapy: cell-cycle dynamics, dose-rate dependence, and fractionation effects”

    2604.27630
  15. physics.bio-ph arXiv submitted 2026-04-30
    Stochastic cell agents reproduce dose-rate effects in particle therapy

    Francesco G. Cordoni +2 · “A stochastic agent-based extension of the GSM2 model for particle therapy: cell-cycle dynamics, dose-rate dependence, and fractionation effects”

    2604.27630
  16. q-bio.TO arXiv submitted 2026-04-29
    Adhesion strength decides if tissues invade smoothly or fragment

    Carles Falc\'o +3 · “Theory of adhesion-driven self-organisation in growing tissues”

    2604.26928
  17. physics.bio-ph arXiv submitted 2026-04-29
    AI learns to design engineered living materials

    Andr\'es D\'iaz Lantada +3 · “Can we teach generative artificial intelligence the design language of engineered living materials?”

    2604.26872
  18. cond-mat.soft arXiv submitted 2026-04-29
    Light and magnets program tunable random walks in active particles

    Tarun Sunkesula Raghavendra +4 · “Programmable Persistent Random Walks in Active Brownian Particles Govern Emergent Dynamics”

    2604.26825
  19. cond-mat.soft arXiv submitted 2026-04-29
    Generalized phase rule limits coexisting patterns in active mixtures

    Chengjie Luo +3 · “Coexistence of patterned phases in chemically active multicomponent mixtures”

    2604.26346
  20. cond-mat.soft arXiv submitted 2026-04-28
    More loops speed ring polymer segregation in cylinders

    Harsh Doshi +3 · “Kinetics of segregation of topologically-modified ring polymers in cylindrical confinement”

    2604.26087
  21. physics.bio-ph arXiv submitted 2026-04-28
    Combined models map protein binding orientations on nanoparticles

    Vigneshwari Karunakaran Annapoorani +3 · “Orientation-Dependent Protein Binding at Nanoparticle Interfaces”

    2604.26086
  22. physics.bio-ph arXiv submitted 2026-04-28
    Docking and models agree on allergen binding orientations

    Vigneshwari Karunakaran Annapoorani +3 · “Orientation-Dependent Protein Binding at Nanoparticle Interfaces”

    2604.26086
  23. cond-mat.stat-mech arXiv submitted 2026-04-28
    Multi-time correlations tighten entropy production bounds

    Yijia Cheng +2 · “Hierarchical Reconstruction of Time-arrow from Multi-time Correlations”

    2604.25749
  24. cond-mat.stat-mech arXiv submitted 2026-04-28
    Multi-time correlations tighten bounds on entropy production

    Yijia Cheng +2 · “Hierarchical Reconstruction of Time-arrow from Multi-time Correlations”

    2604.25749
  25. physics.bio-ph arXiv submitted 2026-04-28
    Bayesian method infers motif rates from nucleic acid ligation counts

    Johannes Harth-Kitzerow +2 · “Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids”

    2604.25701
  26. physics.bio-ph arXiv submitted 2026-04-28
    Bayesian method infers nucleic acid motif rates from ligation data

    Johannes Harth-Kitzerow +2 · “Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids”

    2604.25701
  27. physics.chem-ph arXiv submitted 2026-04-28
    DFTB dynamics recover slow vibrations in pigment spectral densities

    Sayan Maity +2 · “Excitation of Low-Frequency Modes and the Effects of Protein Dynamics on Spectral Densities of Bacteriochlorophyll Molecules”

    2604.25460
  28. physics.bio-ph arXiv submitted 2026-04-28
    Thionine stabilizes DNA thermally at every concentration

    Evgeniya Usenko +3 · “Analysis of DNA thermal stability across a broad range of thionine concentrations”

    2604.25438
  29. q-bio.MN arXiv submitted 2026-04-27
    Biophysical consistency separates true gene models from data fits

    Suryanarayana Maddu +2 · “Learning biophysical models of gene regulation with probability flow matching”

    2604.25062
  30. physics.bio-ph arXiv submitted 2026-04-27
    Okra gel coating cuts scarring on brain electrodes

    Tenglong Luo +12 · “An in situ self-adaptive hydrogel coating enables seamless neural interfaces via okra mucilage polysaccharide and {\alpha}-helical peptide amphiphiles co-assembly”

    2604.23945
  31. cond-mat.soft arXiv submitted 2026-04-26
    Saffman crossover switches dipole pairs to two-dimensional dynamics

    Satyagni Bhattacharya +9 · “Quenched Dipole Pairs in Viscous Fluid Membranes across the Saffman Crossover: Integrable Hamiltonian Dynamics”

    2604.23868
  32. cond-mat.soft arXiv submitted 2026-04-26
    Saffman crossover makes dipole pair dynamics two-dimensional

    Satyagni Bhattacharya +9 · “Quenched Dipole Pairs in Viscous Fluid Membranes across the Saffman Crossover: Integrable Hamiltonian Dynamics”

    2604.23868
  33. physics.bio-ph arXiv submitted 2026-04-26
    Active torques speed information transfer in turning flocks

    Mario Sandoval · “Information transfer enhanced by non-reciprocity in a model of turning flocks”

    2604.23808
  34. physics.bio-ph arXiv submitted 2026-04-26
    Vector order parameter corrects DNA melting predictions

    Nikos Theodorakopoulos · “DNA melting: intra base-pair dynamics and a vector generalization of the Peyrard-Bishop-Dauxois model”

    2604.23771
  35. cond-mat.soft arXiv submitted 2026-04-24
    CPTES silane best for Bloch surface wave antibody biosensors

    Agostino Occhicone +6 · “Comparative Silane Surface Functionalization Strategies for Enhanced Bloch Surface Wave Biosensing of Anti-SARS-CoV-2 Antibodies”

    2604.22444
  36. q-bio.PE arXiv submitted 2026-04-23
    Vegetation patterns reveal if drylands are drying or recovering

    David Pinto-Ramos +3 · “Global remote sensing reveals vegetation clustering as a physical footprint of shifting aridity trends in drylands”

    2604.22122
  37. q-bio.NC arXiv submitted 2026-04-23
    Bounded noise turns regular neuron firing into irregular bursts

    Yefan Wu · “Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model”

    2605.04088
  38. q-bio.NC arXiv submitted 2026-04-23
    Bounded noise turns steady neural pacing into high-frequency jitter

    Yefan Wu · “Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model”

    2605.04088
  39. physics.bio-ph arXiv submitted 2026-04-23
    Exact resistance derived for cylinder-blocked 2D orifice

    Martin Charron +1 · “Exact Resistance of an Orifice in a 2D Membrane Blocked by a Cylindrical Obstruction”

    2604.22049
  40. physics.bio-ph arXiv submitted 2026-04-23
    Mitochondrial shape triggers axonal jams and swelling

    Patrick S. Noerr +3 · “Mitochondrial mechanics nucleates axonal jamming and swelling”

    2604.22024
  41. physics.bio-ph arXiv submitted 2026-04-23
    Bachata Sensual motion reduces to a 3:1 harmonic ratio

    Fernando Ramiro-Manzano · “Wave physics as a choreographic notation for partner dance”

    2604.21918
  42. physics.bio-ph arXiv submitted 2026-04-23
    Wave physics models partner dance as harmonic notation

    Fernando Ramiro-Manzano · “Wave physics as a choreographic notation for partner dance”

    2604.21918
  43. q-bio.NC arXiv submitted 2026-04-23
    Criticality signatures organize along brain hierarchy with opposite static and dynamic

    Gustavo G. Cambrainha +4 · “Hierarchical organization of critical brain dynamics”

    2604.21832
  44. physics.bio-ph arXiv submitted 2026-04-23
    Single-cell patterning creates ordered bacterial films with optical effects

    Matthias Le Bec +9 · “Shaping nematic order in bacterial films with single-cell resolution patterning”

    2604.21655
  45. physics.chem-ph arXiv submitted 2026-04-23
    Surface branching reduces many-body dynamics to one-particle diffusion

    Denis S. Grebenkov · “Reaction-Diffusion Processes with Surface Autocatalysis”

    2604.21586
  46. physics.chem-ph arXiv submitted 2026-04-23
    One eigenvalue decides if surface reactions kill or explode a population

    Denis S. Grebenkov · “Reaction-Diffusion Processes with Surface Autocatalysis”

    2604.21586
  47. physics.chem-ph arXiv submitted 2026-04-23
    Surface interactions set universal rules for population boom or bust

    Denis S. Grebenkov · “Reaction-Diffusion Processes with Surface Autocatalysis”

    2604.21586
  48. physics.comp-ph arXiv submitted 2026-04-23
    GROMACS gains direct support for PyTorch neural network potentials

    Lukas M\"ullender +2 · “Enabling Biomolecular Simulations with Neural Network Potentials in GROMACS”

    2604.21441
  49. physics.bio-ph arXiv submitted 2026-04-22
    Brain correlations from memory effects

    Chesson Sipling +2 · “A Critical Assessment of the Brain Criticality Hypothesis”

    2604.21071
  50. physics.bio-ph arXiv submitted 2026-04-22
    Neuron coupling to slow resources creates scale-invariant activity

    Chesson Sipling +2 · “A Critical Assessment of the Brain Criticality Hypothesis”

    2604.21071