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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 15

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. physics.flu-dyn arXiv submitted 2025-08-01
    Honeycomb microfluidic chip passes simulated pressure test for neurons

    Maxx Yung · “Design, Simulation, and Fabrication of a Hexagonal Microfluidic Platform for Culturing Neurons”

    2508.00425
  2. physics.bio-ph arXiv submitted 2025-07-31
    Cytoplasmic flow reveals single-cell water transport

    Hong Jiang +4 · “Rapid Single-Cell Measurement of Transient Transmembrane Water Flow under Osmotic Gradient”

    2508.00104
  3. physics.bio-ph arXiv submitted 2025-07-31
    Driving droplets out of equilibrium halts Ostwald ripening

    Bradley D. Keister +3 · “Arrested Ostwald Ripening in Non-Equilibrium Systems”

    2507.23580
  4. physics.bio-ph arXiv submitted 2025-07-31
    Deeper skin layers flex more under gentle brushing

    Saito Sakaguchi +4 · “Sub-surface Skin Deformation in Response to Gentle Brushing”

    2507.23462
  5. physics.bio-ph arXiv submitted 2025-07-31
    Phase boundaries in cells could act as molecular decision switches

    Arvind Murugan +3 · “Could Living Cells Use Phase Transitions to Process Information?”

    2507.23384
  6. physics.bio-ph arXiv submitted 2025-07-31
    Phantom particle lets enzyme kinetics run directly in simulations

    Taylor Kearney +1 · “Particle-based simulation of non-elementary bimolecular kinetics”

    2508.10909
  7. cond-mat.soft arXiv submitted 2025-07-30
    Stripe-confined cell clusters obey an exact exponential law

    Harshal Potdar +2 · “Active spin model for cell assemblies on 1D substrates”

    2507.22639
  8. physics.bio-ph arXiv submitted 2025-07-29
    Liquid crystal theory predicts spindle microtubule packing

    Colm P. Kelleher +5 · “Active Liquid Crystal Theory Explains the Collective Organization of Microtubules in Human Mitotic Spindles”

    2507.22273
  9. physics.optics arXiv submitted 2025-07-29
    Standard 5-micron slices kill spectral contrast in unstained microscopy

    Laura Quintana-quintana (1) +17 · “Exploring the role of sample thickness for hyperspectral microscopy tissue discrimination through Monte Carlo simulations”

    2507.21675
  10. cond-mat.soft arXiv submitted 2025-07-29
    Activity is a viewpoint, not a fixed property of matter

    Michael te Vrugt +2 · “What exactly is 'active matter'?”

    2507.21621
  11. physics.bio-ph arXiv submitted 2025-07-28
    Oxidized OpcA opens G6PDH's active-site gate

    Hoshin Kim +7 · “Thiol post-translational modifications modulate allosteric regulation of the OpcA-G6PDH complex through conformational gate control”

    2507.21336
  12. physics.bio-ph arXiv submitted 2025-07-28
    Plunge freezing shreds ferritin before atom probe sees it

    Shuo Zhang +6 · “Atom probe tomography of hydrated biomacromolecules: preliminary results”

    2507.20970
  13. cond-mat.stat-mech arXiv submitted 2025-07-28
    Cost minimum sets KaiABC clock to ~21-hour rhythm

    YeongKyu Lee +1 · “Physical Constraints on the Rhythmicity of the Biological Clock”

    2507.20750
  14. cond-mat.stat-mech arXiv submitted 2025-07-27
    Sticky interface pairs share the DNA-denaturation steady state

    Samvit Mahapatra +2 · “Two fluctuating interfaces with sticking interactions: Invariant measures and dynamics”

    2507.20350
  15. physics.bio-ph arXiv submitted 2025-07-27
    Stretched arteries turn more elastic and less viscous

    Yuxuan Jiang +5 · “Comprehensive characterization of nonlinear viscoelastic properties of arterial tissues using guided-wave optical coherence elastography”

    2507.20107
  16. cond-mat.stat-mech arXiv submitted 2025-07-26
    Two formulas pin down how cell transport slows during aggregation

    Subhadip Chakraborti +1 · “Density-dependent transport coefficients in two-dimensional cellular aggregates”

    2507.19919
  17. q-bio.SC arXiv submitted 2025-07-25
    Longer mRNAs are hit hardest by ribosome-stalling antibiotics

    Johannes Keisers +2 · “Paused in translation: A model for the transcript length-dependent impact of ribosome-targeting antibiotics”

    2507.19395
  18. q-bio.TO arXiv submitted 2025-07-25
    Small 2D colonies break symmetry

    Daniel Aguilar-Hidalgo +10 · “Self-organization drives symmetry-breaking, scaling, and critical growth transitions in stem cell-derived organoids”

    2507.18887
  19. physics.bio-ph arXiv submitted 2025-07-23
    Lambert W-kinks solve extended nerve-membrane wave equation

    V. A. Mendoza-Mill\'an +3 · “Lambert W-kink Solitons Arising from Higher-Order Nonlinearities of Lipid Membranes”

    2507.17965
  20. cond-mat.soft arXiv submitted 2025-07-23
    Contractile motors amplify a crosslink bias into chromatin sorting

    Ligesh Theeyancheri +2 · “Differential Crosslinking and Contractile Motors Drive Nuclear Chromatin Compaction”

    2507.17883
  21. physics.bio-ph arXiv submitted 2025-07-23
    Laser tests put skin heat phase lags under 0.5 seconds

    Mohammad Azhdari +6 · “Insights into experimental evaluation of the non-fourier heat transfer model in biological tissues”

    2507.17627
  22. cond-mat.soft arXiv submitted 2025-07-23
    Floppy vesicles resist full engulfment even with excess membrane area

    Stijn van der Ham +3 · “From shallow to full wrapping: geometry and deformability dictate lipid vesicle internalization”

    2507.17434
  23. cond-mat.dis-nn arXiv submitted 2025-07-22
    Many coupled particles reduce to one exact equation

    Emmy Blumenthal · “Building Intuition for Dynamical Mean-Field Theory: A Simple Model and the Cavity Method”

    2507.16654
  24. cond-mat.soft arXiv submitted 2025-07-22
    Exact model yields the aerotactic band shape and the flow it drives

    F. Detcheverry · “Exact model of aerotactic band: From Fokker-Planck equation to band structure and fluid flow”

    2507.16314
  25. physics.flu-dyn arXiv submitted 2025-07-22
    Porous layers can speed up or slow down Taylor-sheet swimmers

    Tasawar Iqbal +3 · “A Taylor swimming sheet under a finite Brinkman layer”

    2507.16125
  26. nlin.AO arXiv submitted 2025-07-21
    Fish school memory is a noise effect

    Alyssa Chan +1 · “Noise-Induced Collective Memory in Schooling Fish”

    2507.16102
  27. physics.bio-ph arXiv submitted 2025-07-21
    Multistage division stabilizes concentration-based cell size control

    Motasem ElGamel +2 · “General mechanism for concentration-based cell size control”

    2507.16066
  28. cond-mat.soft arXiv submitted 2025-07-21
    One interaction-energy difference damps or amplifies oscillations

    Jonathan Bauermann +2 · “Spatiotemporal organization of chemical oscillators via phase separation”

    2507.16030
  29. q-bio.NC arXiv submitted 2025-07-21
    Adding biological detail won't settle what brain networks mean

    David Papo +1 · “Biological detail and graph structure in network neuroscience”

    2507.15789
  30. q-bio.NC arXiv submitted 2025-07-21
    Predicting chaos vs order fails in all five neuron models

    Brandon B. Le +5 · “Ubiquity of Uncertainty in Neuron Systems”

    2507.15702
  31. physics.bio-ph arXiv submitted 2025-07-21
    Thin plant stems find lowest energy at helix pitch 0.05–0.22

    Henri Gouin (AMU +1 · “Climbing plants -- Wrapping elastic plant stems around a cylindrical stake”

    2507.15414
  32. cond-mat.soft arXiv submitted 2025-07-20
    Order-disorder transition maps to dipolar Ising exactly in 3D

    Leiming Chen +2 · “The Order-disorder Transition in Incompressible Polar Active Fluids with an Easy Axis”

    2507.15159
  33. physics.bio-ph arXiv submitted 2025-07-19
    Thermal DNA 'breathing' enlarges radiation target

    Jose L. Rodr\'iguez +3 · “Thermal Radiosensitization Beyond Misrepair: A Mechanistic Model of Temperature-Enhanced DNA Vulnerability”

    2507.14712
  34. physics.med-ph arXiv submitted 2025-07-19
    Multiplying spectra by water's derivative sharpens glucose predictions

    Hadi Barati +3 · “Analyzing Blood Glucose Levels with Near Infra-Red Spectroscopy and Chemometric Multivariate Methods”

    2507.14557
  35. cond-mat.soft arXiv submitted 2025-07-18
    Finite-fuel flocks relax to passive equilibrium

    Tanniemola B. Liverpool +3 · “The physics and mathematics of living and dying matter”

    2507.14294
  36. cs.LG arXiv submitted 2025-07-18
    Trained on MD data, a GAN invents new protein shapes

    Jingbo Liang +1 · “MoDyGAN: Combining Molecular Dynamics With GANs to Investigate Protein Conformational Space”

    2507.13950
  37. physics.bio-ph arXiv submitted 2025-07-18
    Capillary flow obeys a three-phase pressure law

    Xinyi Cai +3 · “Coupled Modeling of External Pressure and Capillary Blood Flow: Nonlinear Dynamics of Vascular Elasticity and Collapse Effects”

    2507.13653
  38. math.AP arXiv submitted 2025-07-17
    Proven: 3D blood-flow pressures match cheaper 1D models

    Laurel Ohm +1 · “A hierarchy of blood vessel models, Part II: 3D-3D to 3D-1D and 1D”

    2507.13330
  39. math.AP arXiv submitted 2025-07-17
    1D blood-vessel model proven to match 3D-1D at rate ε^{1/2}|log ε|

    Laurel Ohm +1 · “A hierarchy of blood vessel models, Part I: 3D-1D to 1D”

    2507.13316
  40. physics.bio-ph arXiv submitted 2025-07-17
    Counting ribosomes one polysome at a time

    Huang Tang +8 · “The fantastic single-molecule techniques”

    2507.13211
  41. q-bio.MN arXiv submitted 2025-07-16
    Four-state non-equilibrium cycles explain constant gene switching

    Benjamin Zoller +3 · “Invariant non-equilibrium dynamics of transcriptional regulation optimize information flow”

    2507.12395
  42. physics.bio-ph arXiv submitted 2025-07-16
    Simple controllers work because evolution builds a slow mode

    Christopher Joel Russo +4 · “Simple biological controllers drive the evolution of soft modes”

    2507.11973
  43. physics.bio-ph arXiv submitted 2025-07-15
    Neurons derive resting potential from first principles

    J\'anos V\'egh · “The unified cross-disciplinary model of the operation of neurons”

    2507.11448
  44. physics.chem-ph arXiv submitted 2025-07-15
    Room-temperature vibronic couplings found in porphyrin nanotubes

    Asha S. Thomas +4 · “Disordered Photosynthetic Aggregates Can Host Functional Vibronic Couplings At Room Temperature”

    2507.11007
  45. physics.chem-ph arXiv submitted 2025-07-15
    One model scores and screens nearly all biomolecular complexes

    Yuchen Zhu +11 · “BioScore: A Foundational Scoring Function For Diverse Biomolecular Complexes”

    2507.10877
  46. cond-mat.soft arXiv submitted 2025-07-14
    Nanoindentation of collagen: no rate dependence below 1 µm/s

    Robert Magerle +4 · “Rate-independent hysteretic energy dissipation in collagen fibrils”

    2507.10841
  47. q-bio.PE arXiv submitted 2025-07-14
    Markov model tracks antibody levels through infections and shots

    Rayanne A. Luke +9 · “Probabilistic Modeling of Antibody Kinetics Post Infection and Vaccination: A Markov Chain Approach”

    2507.10793
  48. physics.soc-ph arXiv submitted 2025-07-14
    Last-born children balance sex ratio even when births run male

    Nahyeon Lee +2 · “Balancing the Last Birth: A Game-Theoretical Resolution to the Human Sex Ratio Puzzle”

    2507.10332
  49. q-bio.BM arXiv submitted 2025-07-14
    BioPykrete: an ice-binding protein glue makes ice 10x stronger

    Chen Adar +8 · “Biomimetic Engineering of a Fortified Ice Composite with Enhanced Mechanical Properties”

    2507.22068
  50. physics.bio-ph arXiv submitted 2025-07-14
    Single-molecule sensor sees neurotransmitters at 10 attomolar

    Aneeth Kakkanattu Arunkumar +5 · “Probing the single neurotransmitters with the WGM microcavity-hybridized plasmonic nanospiked antennas”

    2507.10146