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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 22

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. cond-mat.soft arXiv submitted 2025-01-04
    Crowded ring polymers flip loop positions near sphere wall

    Kingkini Roychoudhury +4 · “Entropic organization of topologically modified ring polymers in spherical confinement”

    2501.02276
  2. physics.bio-ph arXiv submitted 2025-01-03
    11,500 brain cell shapes mapped for sharper grey-matter MRI

    Charlie Aird-Rossiter +4 · “Decoding Gray Matter: large-scale analysis of brain cell morphometry to inform microstructural modeling of diffusion MR signals”

    2501.02100
  3. physics.bio-ph arXiv submitted 2025-01-03
    One traction curve predicts axon steering and bounce

    Christoforos Kassianides +2 · “The multiscale mechanics of axon durotaxis”

    2501.01868
  4. cond-mat.stat-mech arXiv submitted 2025-01-03
    An inert binding site can speed an enzyme 2.9x

    Hila Katznelson +1 · “Acceleration of enzymatic reactions due to nearby inactive binding sites”

    2501.01662
  5. physics.bio-ph arXiv submitted 2025-01-03
    Imaging plus AI IDs bacteria and drug resistance in hours

    Dohyeon Lee +7 · “Advances in imaging techniques for the study of individual bacteria and their pathophysiology”

    2501.01592
  6. physics.flu-dyn arXiv submitted 2025-01-02
    Flagellar mean shape, not stroke, sets Chlamydomonas speed

    Kelli E. Gutierrez +3 · “Quantification of Flagellar Gait Changes with Combined Shape Mode Analysis and Swimming Simulations”

    2501.01554
  7. cond-mat.soft arXiv submitted 2025-01-02
    Curved spheres force nested counter-domain crystal defects

    Han Xie +4 · “Competing Hexagonal and Square Lattices on a Spherical Surface”

    2501.01270
  8. physics.optics arXiv submitted 2025-01-02
    Megapixel camera maps plant stress via delayed luminescence

    Yan-Xia Liu +7 · “High-Resolution Imaging of Plant Delayed Luminescence”

    2501.01173
  9. cond-mat.stat-mech arXiv submitted 2025-01-02
    Exact equality links response to transition correlations in Markov systems

    Jiming Zheng +1 · “Unified Linear Fluctuation-Response Theory Arbitrarily Far from Equilibrium”

    2501.01050
  10. physics.flu-dyn arXiv submitted 2025-01-01
    Pullers shield odors better than pushers in turbulence

    Martin James +2 · “Effect of swimming mode on shielding of odor traces in turbulence”

    2501.00789
  11. physics.bio-ph arXiv submitted 2024-12-31
    Honeybees keep ventral optic flow constant in apertures

    Timothy Jakobi +3 · “How Honeybees Perceive and Traverse Apertures”

    2501.00646
  12. physics.med-ph arXiv submitted 2024-12-31
    Terahertz polarimetry sees tissue structure via Mie scattering

    Erica Heller +3 · “Mie scattering due to tissue structures in the terahertz regime: Experimental and Monte Carlo verification using diffused polarimetric imaging in highly attenuating tissue phantoms”

    2501.00630
  13. physics.bio-ph arXiv submitted 2024-12-31
    Replicators gain productivity from environmental information

    Jordi Pi\~nero +4 · “Information bounds production in replicator systems”

    2501.00396
  14. q-bio.NC arXiv submitted 2024-12-31
    Model of worm brain reproduces random forward-reversal switches

    Megan Morrison +1 · “A data-driven biophysical network model reproduces C. elegans premotor neural dynamics”

    2501.00278
  15. cond-mat.soft arXiv submitted 2024-12-30
    Thin printed liver discs keep working for 21 days

    Vignesh Subramaniam +8 · “A Functional Human Liver Tissue Model: 3D Bioprinted Co-culture Discoids”

    2501.00086
  16. physics.bio-ph arXiv submitted 2024-12-30
    Zebrafish U-turns are visual signals

    C. K. Chan +1 · “Dynamics of Information Exchange in Zebrafish: The Role of U-Turns in Visual Communication and Behavior Modulation”

    2412.20912
  17. physics.bio-ph arXiv submitted 2024-12-30
    Electric field moves bone-scaffold nutrients faster than pressure

    Mohammad Osaid +1 · “Electrokinetic Flow Modeling Through Bone Scaffold”

    2501.04025
  18. cond-mat.soft arXiv submitted 2024-12-29
    Active filaments self-assemble into regular

    Sonu Karayat +4 · “Kinetically arrested clusters in active filament arrays”

    2412.20536
  19. physics.med-ph arXiv submitted 2024-12-28
    Light-localization metric tracks alcohol and colon-cancer damage

    Ishmael Apachigawo +5 · “Photonics detection of molecular-specific spatial structural alterations in cell nuclei due to chronic alcoholism and probiotics treatments on colon cancer via a light localization method using confocal imaging”

    2412.20063
  20. cond-mat.stat-mech arXiv submitted 2024-12-27
    Single neurons show the arrow of time

    Trevor GrandPre +2 · “Direct estimates of irreversibility from time series”

    2412.19772
  21. physics.bio-ph arXiv submitted 2024-12-27
    Integrative models turn disordered proteins into testable biology

    Zi Hao Liu +4 · “Biological Insights from Integrative Modeling of Intrinsically Disordered Protein Systems”

    2412.19875
  22. physics.bio-ph arXiv submitted 2024-12-27
    Neighbor-swap geometry steers cell migration

    Harish P. Jain +2 · “Emergent cell migration from cell shape deformations and T1 transitions”

    2412.19686
  23. physics.med-ph arXiv submitted 2024-12-27
    Break location in 3D genome, not break count, drives cell death

    Ankang Hu +4 · “Correlation Between DNA Double-Strand Break Distribution in 3D Genome and Radiation-Induced Cell Death”

    2501.07579
  24. physics.bio-ph arXiv submitted 2024-12-27
    Single-molecule method tracks membrane insertion at 0.6 nm

    C. Yang +4 · “Real-Time Analysis of Nanoscale Dynamics in Membrane Protein Insertion via Single-Molecule Imaging”

    2412.19596
  25. physics.bio-ph arXiv submitted 2024-12-27
    Heat tunes a single-molecule ruler's range

    Q. Fan +5 · “Single-molecule Surface-Induced Fluorescence Attenuation Based on Reduced Graphene Oxide”

    2412.19592
  26. physics.optics arXiv submitted 2024-12-27
    Fractal dimension and optical disorder collapse into one formula

    Santanu Maity +4 · “Optical probing of fractal and multifractal connection to structural disorder in weakly optical disordered media: Application to cancer detection”

    2412.19532
  27. physics.chem-ph arXiv submitted 2024-12-25
    Neural net spots hydroxylation on single molecules

    Yingqi Zhao +6 · “Label-free SERS Discrimination of Proline from Hydroxylated Proline at Single-molecule Level Assisted by a Deep Learning Model”

    2412.18935
  28. physics.med-ph arXiv submitted 2024-12-25
    Parkinson's tissue shows 27% more nanoscale disorder

    Fatemah Alharthi +5 · “Optical detection of the spatial structural alteration in the human brain tissues and cells and DNA and chromatin due to Parkinsons disease”

    2412.18804
  29. physics.bio-ph arXiv submitted 2024-12-25
    Viral swarms get an uncertainty limit

    Lillian St. Kleess · “Viral Lattice Theory: A Biophysical Model for Virion Motion”

    2501.05459
  30. physics.bio-ph arXiv submitted 2024-12-24
    A statistical test adds error bars and p-values to cell-force maps

    Aleix Boquet-Pujadas · “How accurate is mechanobiology? A statistical test of cell force”

    2412.18406
  31. physics.med-ph arXiv submitted 2024-12-24
    AI model identifies Pseudomonas biofilm at 86.6% accuracy

    Bidisha Sengupta +7 · “An AI-directed analytical study on the optical transmission microscopic images of Pseudomonas aeruginosa in planktonic and biofilm states”

    2412.18205
  32. physics.bio-ph arXiv submitted 2024-12-23
    Sickle cells take the slow branch at blood-vessel forks

    Xiaopo Cheng +3 · “Red blood cell partitioning and segregation through vascular bifurcations in a model of sickle cell disease”

    2501.04017
  33. physics.geo-ph arXiv submitted 2024-12-23
    Randomized SSA matches classic signal splits

    Fernando Lopes +4 · “On the Optimization of Singular Spectrum Analyses: A Pragmatic Approach”

    2412.17793
  34. cond-mat.soft arXiv submitted 2024-12-23
    Activity flips fragile glass relaxation into sub-Arrhenius slowdown

    Subhodeep Dey +1 · “Scaling Description of the Relaxation Dynamics and Dynamical Heterogeneity of an Active Glass-forming Liquid”

    2412.17666
  35. physics.bio-ph arXiv submitted 2024-12-23
    Nerve signals are a coupled wave ensemble

    J\"uri Engelbrecht +2 · “From modelling to understanding: the signals in nerves”

    2412.17413
  36. q-bio.NC arXiv submitted 2024-12-22
    Critical state maximizes signal reach and timescale diversity

    Yang Qi +6 · “Optimal signal transmission and timescale diversity in a model of human brain operating near criticality”

    2412.17043
  37. physics.optics arXiv submitted 2024-12-22
    Polarized interferometer beats Rayleigh's curse in fluorescence

    Cheyenne S. Mitchell +5 · “Quantum-inspired super-resolution of fluorescent point-like sources”

    2412.16835
  38. physics.flu-dyn arXiv submitted 2024-12-21
    Treadmill cilia out-feed all tested strokes in nutrient gradients

    Jingyi Liu +2 · “Nutrient Transport in Concentration Gradients”

    2412.16408
  39. physics.bio-ph arXiv submitted 2024-12-20
    FLASH effect traced to peroxyl radicals by multiscale model

    Marco Battestini +4 · “A multiscale radiation biophysical stochastic model describing the cell survival response at ultra-high dose rate”

    2412.16322
  40. nlin.PS arXiv submitted 2024-12-20
    Spiral waves cut frog cell-cycle period nearly in half

    Daniel Cebri\'an-Lacasa +7 · “Spiral waves speed up cell cycle oscillations in the frog cytoplasm”

    2412.16094
  41. physics.bio-ph arXiv submitted 2024-12-20
    Homeostatic growth stress is curvature

    Alexander Erlich +1 · “The geometric nature of homeostatic stress in biological growth”

    2412.16021
  42. physics.med-ph arXiv submitted 2024-12-20
    Phantom generates MRS spectra that match real scans

    D.M.J. van de Sande +11 · “A Digital Phantom for MR Spectroscopy Data Simulation”

    2412.15869
  43. cond-mat.soft arXiv submitted 2024-12-20
    Polyelectrolyte coacervates coarsen as networks with a square-root law

    Jiaxing Yuan +1 · “Network-forming phase separation of oppositely charged polyelectrolytes forming coacervates in a solvent”

    2412.15753
  44. physics.flu-dyn arXiv submitted 2024-12-20
    Viscosity jumps always slow down crawling on a lubricating film

    Takahiro Kanazawa +1 · “Locomotion on a lubricating fluid with spatial viscosity variations”

    2412.15656
  45. physics.bio-ph arXiv submitted 2024-12-19
    A liquid droplet restores epigenetic marks for 50 generations

    Sukanta Mukherjee +4 · “A self-organised liquid reaction container for cellular memory”

    2412.15394
  46. cond-mat.soft arXiv submitted 2024-12-19
    Probe diffusion traced to one integral over size-dependent viscosity

    Jeffrey C. Everts +2 · “Brownian motion at various length scales with hydrodynamic and direct interactions”

    2412.15017
  47. physics.bio-ph arXiv submitted 2024-12-19
    Caprin1 droplets stay stable on a -110 millivolt shell

    Maria Tsanai +1 · “Determining the Role of Electrostatics in the Making and Breaking of the Caprin1-ATP Nanocondensate”

    2412.14990
  48. nlin.PS arXiv submitted 2024-12-19
    Growth term stabilizes active fluids and spawns chimeras

    Joydeep Das +2 · “From Order to Chimeras: Unraveling Dynamic Patterns in Active Fluids with Nonlinear Growth”

    2412.14729
  49. cond-mat.stat-mech arXiv submitted 2024-12-19
    Internal drift turns fractional Laplace subdiffusion into normal diffusion

    Wei Wang +3 · “Paradoxical non-Gaussian behavior in fractional Laplace motion with drift”

    2412.14674
  50. physics.med-ph arXiv submitted 2024-12-19
    Light probes track Alzheimer's damage in human brain tissue

    Fatemah Alharthi +6 · “Dual Photonics Probing of Nano- to Submicron-Scale Structural Alterations in Human Brain Tissues or Cells and Chromatin or DNA with the Progression of Alzheimers Disease”

    2412.14651