INDEX
Every paper Pith has read and judged, in one searchable index.
-
q-bio.BM arXiv submitted 2026-02-25Helix-coil transitions in proteins measure 0.145 residues wide
Yiquan Wang · “Spectral analysis of protein backbone geometry reveals abrupt helix--coil boundaries”
2602.21787 -
physics.bio-ph arXiv submitted 2026-02-23Wild-type CV predicts mutation effects on unfolding rates
Alexander Zhilkin +2 · “Guiding Peptide Kinetics via Collective-Variable Tuning of Free-Energy Barriers”
2602.19936 -
cond-mat.soft arXiv submitted 2026-02-21Three-slab model captures membrane electricity where local theory fails
M.M.B. Sheraj +1 · “Three-slab model for the dielectric permittivity of a lipid bilayer”
2602.18852 -
cond-mat.stat-mech arXiv submitted 2026-02-20One spectral ratio decides: delta or exponential first-passage limits
Julian B. Voits +1 · “Emergence of generic first-passage time distributions for large Markovian networks”
2602.18265 -
physics.bio-ph arXiv submitted 2026-02-20Feedback loops trade information for geometric fidelity
Mintu Nandi +1 · “Decoding cell signaling via optimal transport and information theory”
2602.18028 -
cond-mat.soft arXiv submitted 2026-02-19Motor coupling lengthens flagellar beats and creates bi-stability
F. Fanelli +1 · “How Molecular Motors' Interaction Shapes Flagellar Beat and Its Fluctuations”
2602.17163 -
stat.ML arXiv submitted 2026-02-18Bias-and-reweight makes diffusion samplers sample rare states cheaply
Yu Xie +12 · “Enhanced Diffusion Sampling: Efficient Rare Event Sampling and Free Energy Calculation with Diffusion Models”
2602.16634 -
physics.bio-ph arXiv submitted 2026-02-18Pumps self-align to create sustained membrane voltage
Ryosuke Nishide +1 · “Self-Organized Bioelectricity via Collective Pump Alignment: Toward a Physical Origin of Chemiosmosis”
2602.16171 -
physics.comp-ph arXiv submitted 2026-02-17Biomembrane shapes form intrinsic geometric group
Zhong-Can Ou-Yang +1 · “Liquid Crystal Theory of Biomembranes”
2602.16002 -
physics.flu-dyn arXiv submitted 2026-02-14Growth keeps microbial droplets round on viscous fluids
Vicente Gomez Herrera +1 · “Instability of microbial droplets growing on viscous substrates”
2602.13724 -
physics.bio-ph arXiv submitted 2026-02-13Tissue viscosity follows a √3/4 rule from cell viscosity
Shao-Zhen Lin +2 · “Viscous vertex model for active epithelial tissues”
2602.13049 -
physics.chem-ph arXiv submitted 2026-02-13Model achieves quantum accuracy on 1500-atom biomolecules
Lin Huang +10 · “UBio-MolFM: A Universal Molecular Foundation Model for Bio-Systems”
2602.17709 -
cs.LG arXiv submitted 2026-02-11Protein language embeddings cut MD surrogate cost 10x
Panagiotis Antoniadis +3 · “Protein Language Model Embeddings Improve Generalization of Implicit Transfer Operators”
2602.11216 -
physics.med-ph arXiv submitted 2026-02-09Microwave array focuses deep-brain stimulation without surgery
Mika S\"oderstr\"om +3 · “Microwave focusing with temporal interference for non-invasive deep brain stimulation”
2602.18477 -
cond-mat.dis-nn arXiv submitted 2026-02-03Brain data lands on predicted critical line of random Markov model
Faheem Mosam +1 · “Entangled criticality and irreversibility in random Markov dynamics”
2602.04905 -
physics.bio-ph arXiv submitted 2026-02-02Balanced metabolite levels raise metabolic control but also heat loss
Jumpei F. Yamagishi +1 · “Thermodynamic cost-controllability tradeoff in metabolic currency coupling”
2602.01604 -
physics.bio-ph arXiv submitted 2026-01-30Cells can predict a signal's final strength before it arrives
Ketevan Danelia +2 · “You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy”
2602.00261 -
physics.med-ph arXiv submitted 2026-01-30Five parameters unify brain tissue response from 0 to 2100 Hz
Laura Ruhland +3 · “Combining quasi-static and high frequency experiments for the viscoelastic characterization of brain tissue”
2601.22743 -
cond-mat.soft arXiv submitted 2026-01-29Two networks explain spider silk yield and recovery
Renata Oliv\'e +2 · “Plasticity, hysteresis, and recovery mechanisms in spider silk fibers”
2602.00147 -
cond-mat.soft arXiv submitted 2026-01-28Target stiffness decides if immune cells bite
Shubhadeep Sadhukhan +12 · “From biting to engulfment: Target mechanics determines modes of phagocytosis through curvature--actin coupling”
2601.20719 -
physics.bio-ph arXiv submitted 2026-01-28Plankton catch prey using stereo flow sensors plus rolls
Tommaso Redaelli +2 · “Steer'n Roll: A Stereoscopic Flow-Sensing Strategy for Planktonic Prey Detection and Capture”
2601.20421 -
physics.bio-ph arXiv submitted 2026-01-26Velocity sets muscle efficiency peak more than stimulation frequency
Jiaxiang Xu +1 · “Effects of stimulation frequencies on energy efficiency of a muscle fiber during contraction”
2601.18073 -
physics.bio-ph arXiv submitted 2026-01-21Protein forces go non-monotonic at large membrane bends
Gaetano Ferraro +1 · “Interaction between cell membranes and protein inclusions in the large-deformation regime”
2601.15477 -
cs.RO arXiv submitted 2026-01-21Multi-jointed arched foot damps landings better than flat feet
Satoru Hashimoto +3 · “Landing-Induced Viscoelastic Changes in an Anthropomimetic Foot Joint Structure are Modulated by Foot Structure and Posture”
2601.14634 -
cond-mat.soft arXiv submitted 2026-01-20Cell-scale tensions alone set tissue shape and stress
Nikolas H. Claussen +2 · “Tissue shape from cell-scale active tensions”
2601.14467 -
quant-ph arXiv submitted 2026-01-15Bell-type test can certify nonclassicality in autoencoder latent space
I. K. Kominis +4 · “Searching for Quantum Effects in the Brain: A Bell-Type Test for Nonclassical Latent Representations in Autoencoders”
2601.10588 -
physics.chem-ph arXiv submitted 2026-01-14Machine-learned force fields match DFT accuracy for biomolecular vibrations
Sergio Su\'arez-Dou +5 · “Quantum-Accurate Conformational Stabilities and Vibrational Dynamics in Molecules and Proteins with Machine-Learned Force Fields”
2601.09845 -
physics.bio-ph arXiv submitted 2026-01-14HGO and polynomial models fit tendon strains where neo-Hookean fails
Carla Nathaly Villac\'is N\'u\~nez +5 · “Constitutive parameter inference using physics-based data-driven modeling in full volume datasets of intact and torn rotator cuff tendons”
2601.09660 -
physics.bio-ph arXiv submitted 2026-01-08Language model statistics drive a new implicit solvent model
Justin Airas +1 · “Knowledge Distillation of a Protein Language Model Yields a Foundational Implicit Solvent Model”
2601.05388 -
physics.flu-dyn arXiv submitted 2026-01-083D membrane/droplet flow solver reduces to two Poisson equations
Andreu F. Gallen +3 · “Deformable bodies in a 3-dimensional viscous flow: Vorticity-Stream vector formulation”
2601.05031 -
cond-mat.mes-hall arXiv submitted 2026-01-04Analytical formulas give zero-current voltage in charged nanochannels
Ramadan Abu-Rjal +1 · “The transmembrane potential across a charged nanochannel subjected to asymmetric electrolytes”
2601.01536 -
physics.optics arXiv submitted 2026-01-02Interferometer measures phase 10x stably and fingerprints cancer cells
Kamyar Behrouzi +5 · “AI-Assisted Hyperspectral Interferometry and Single-Cell Dispersion Imaging”
2601.00997 -
physics.hist-ph arXiv submitted 2026-01-02Assembly theory measures causation to define life
Leroy Cronin +1 · “The Physics of Causation”
2601.00515 -
cond-mat.stat-mech arXiv submitted 2025-12-31Entropy production equals four times mutual info rate plus flow
Doohyeong Cho +1 · “Exact Identity Linking Entropy Production and Mutual Information”
2512.24877 -
q-bio.MN arXiv submitted 2025-12-30Epigenetic feedback reshapes the Waddington landscape
Sascha H. Hauck +3 · “Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks”
2512.24427 -
cond-mat.soft arXiv submitted 2025-12-28Myofibroblasts anchor at -1/2 defects and slow recombination
Zhaofei Zheng +3 · “Myofibroblasts slow down defect recombination dynamics in mixed cell monolayers”
2512.22923 -
physics.med-ph arXiv submitted 2025-12-24Dual-mode sensor quantifies three cardiac biomarkers in 23 minutes
Gyeo-Re Han +14 · “Deep learning-enhanced dual-mode multiplexed optical sensor for point-of-care diagnostics of cardiovascular diseases”
2512.21389 -
physics.med-ph arXiv submitted 2025-12-24Uncertainty check lifts Lyme test sensitivity to 96%
Artem Goncharov +4 · “Autonomous Uncertainty Quantification for Computational Point-of-care Sensors”
2512.21335 -
q-bio.BM arXiv submitted 2025-12-23Physics model turns DMS data into RNA ensemble predictions
Giuseppe Sacco +4 · “MERGE-RNA: a physics-based model to predict RNA secondary structure ensembles with chemical probing”
2512.20581 -
cond-mat.soft arXiv submitted 2025-12-23Polar-apolar mixtures enter chaotic phase with proliferating defects
Partha Sarathi Mondal +2 · “Spatiotemporal Chaos and Defect Proliferation in Polar-Apolar Active Mixture”
2512.20289 -
nlin.AO arXiv submitted 2025-12-22Topology alone can make collective dynamics non-reciprocal
Jyotiranjan Beuria +1 · “Topological Flux on a Context Manifold Generates Nonreciprocal Collective Dynamics”
2512.19598 -
physics.optics arXiv submitted 2025-12-19Crystal pulse splitter delivers kilohertz two-photon live imaging
Lei Zhu +7 · “Two-photon light-sheet live imaging at kilohertz frame rate using birefringence-based pulse splitting”
2512.17783 -
physics.bio-ph arXiv submitted 2025-12-17Hodgkin-Huxley model fits plant APs in changing light conditions
Imen Bekkari +2 · “Modeling Plant Action Potentials under Photoperiod Stress via Hodgkin-Huxley Dynamics”
2512.15236 -
quant-ph arXiv submitted 2025-12-13Coherence dispersion peaks at intermediate entropy
Fernando Parisio · “Quantum Coherence Dispersion”
2512.12342 -
physics.bio-ph arXiv submitted 2025-12-11Posture-holding energy cost reduces to mean drift plus tremor
Serhii V Marchenko · “Absement: Quantitative Assessment of Metabolic Cost during Quasi-Isometric Muscle Loading”
2512.13720 -
physics.bio-ph arXiv submitted 2025-12-11Motor count fluctuations explain cilium beat variability
Maximilian Kotz +2 · “Motor shot noise explains active fluctuations in a single cilium”
2512.10727 -
quant-ph arXiv submitted 2025-12-09Quantum computer predicts hydration sites in protein pockets
Daniele Loco +3 · “Practical protein-pocket hydration-site prediction for drug discovery on a quantum computer”
2512.08390 -
physics.bio-ph arXiv submitted 2025-12-09Enzyme cycles alone can stabilize membrane domains
Damiano Andreghetti +3 · “Enzyme-driven phase separation”
2512.08356 -
physics.bio-ph arXiv submitted 2025-12-09Environmental rhythms can rescue phage-bacteria coexistence
Hao-Neng Luo +2 · “Frequency Locking to Environmental Forcing Suppresses Oscillatory Extinction in Phage-Bacteria Interactions”
2512.08224 -
physics.bio-ph arXiv submitted 2025-12-08Metabolic scaling exponent grows with each developmental stage
Dorilson Silva Cambui · “Metabolic rate beyond the 3/4 law”
2512.08031