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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 16

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. physics.bio-ph arXiv submitted 2025-07-12
    Melanosome lifetimes grow for an hour of laser exposure

    Mykyta Kizilov +3 · “Fluorescence Lifetime Imaging Microscopy Analysis of Isolated Melanosomes”

    2507.09114
  2. physics.bio-ph arXiv submitted 2025-07-11
    Mirror afterimages cross between eye maps in the brain

    Albert Le Floch +1 · “Direct observation of the crossed interhemispheric transfer of the left-right mirror-images in human vision”

    2507.08703
  3. physics.med-ph arXiv submitted 2025-07-11
    MRI-only brain ultrasound planning matches CT accuracy

    Hengyu Gao +10 · “Rapid MRI-Based Synthetic CT Simulations for Precise tFUS Targeting”

    2507.08688
  4. physics.chem-ph arXiv submitted 2025-07-11
    Spin polarization can make radical reactions chiral

    Thomas P Fay · “Enantioselective radical reactions can be induced by electron spin polarization: A quantum mechanism for Nature's emergent homochirality?”

    2507.08287
  5. q-bio.SC arXiv submitted 2025-07-11
    Model: RyR clusters are on-off switches for calcium sparks

    Tian-Tian Li +4 · “Formation and Regulation of Calcium Sparks on a Nonlinear Spatial Network of Ryanodine Receptors”

    2507.08258
  6. physics.bio-ph arXiv submitted 2025-07-10
    Autoencoder trained on two images tracks biofilm growth for 17.5 hours

    Daniela P\'erez Guerrero +7 · “Latent Space-Driven Quantification of Biofilm Formation using Time Resolved Droplet Microfluidics”

    2507.07632
  7. physics.bio-ph arXiv submitted 2025-07-10
    Label-free microscope images cell viscoelasticity twenty times faster

    Nicolas P. Mauranyapin +9 · “Label-free microscope for rheological imaging of cells”

    2507.07470
  8. cond-mat.stat-mech arXiv submitted 2025-07-09
    Single-rate perturbations never flip steady-state response signs

    Carlos Floyd +2 · “Local imperfect feedback control in non-equilibrium biophysical systems enabled by thermodynamic constraints”

    2507.07295
  9. physics.bio-ph arXiv submitted 2025-07-08
    72% of bioimage analysts say they'd pay for GloBIAS

    Agustin Andres Corbat +16 · “GloBIAS: strengthening the foundations of BioImage Analysis”

    2507.06407
  10. cond-mat.stat-mech arXiv submitted 2025-07-08
    Best length for back relaxation is set by the mean square displacement

    Gabriel Knotz +3 · “Evaluating non-equilibrium trajectories via mean back relaxation: Dependence on length and time scales”

    2507.05912
  11. physics.med-ph arXiv submitted 2025-07-08
    Maxwell parameter cuts modeled artery-wall drag by 219%

    S P Shivakumar +8 · “Magneto-radiative modelling and artificial neural network optimization of biofluid flow in a stenosed arterial domain”

    2507.06273
  12. physics.bio-ph arXiv submitted 2025-07-08
    Fluorescence noise holds 99% of the likelihood in tracking data

    Zachary H. Hendrix +2 · “How Easy Is It to Learn Motion Models from Widefield Fluorescence Single Particle Tracks?”

    2507.05599
  13. quant-ph arXiv submitted 2025-07-07
    Four bias fields recover nanodiamond orientation plus local field

    Yizhou Wang +6 · “Simultaneous Determination of Local Magnetic Fields and Sensor Orientation with Nitrogen-Vacancy Centers in Nanodiamond”

    2507.05366
  14. physics.bio-ph arXiv submitted 2025-07-07
    Laser probe tells CRISPR-edited colon cancer cells apart

    Mykyta Kizilov +2 · “Differentiation of Wild-Type and CRISPR-Modified Colon Cancer Cells Using Brillouin Microscopy”

    2507.05329
  15. physics.optics arXiv submitted 2025-07-07
    Brillouin light maps melanoma cells by stiffness and viscosity

    Mykyta Kizilov +3 · “Viscoelastic Characterization of Melanoma Cells Using Brillouin Spectroscopy”

    2507.05186
  16. q-bio.MN arXiv submitted 2025-07-07
    New encoding dimensions turn on exactly when capacities match

    Vahe Galstyan +2 · “Intuitive dissection of the Gaussian information bottleneck method with an application to optimal prediction”

    2507.05183
  17. physics.chem-ph arXiv submitted 2025-07-05
    Electron pathway choice sets how much work PSII can deliver

    Trishna Kalita +3 · “Ergotropy of a Photosynthetic Reaction Center”

    2507.04097
  18. physics.bio-ph arXiv submitted 2025-07-04
    An undulating robot localizes like waves in the Aubry-André model

    Christopher J. Pierce +4 · “Aubry-Andr\'e Localization Transition for an Active Undulator”

    2507.03715
  19. q-bio.TO arXiv submitted 2025-07-04
    One villus spacing maximizes gut absorption

    Martin Garic +5 · “Intestinal villi and crypts density maximizing nutrient absorption”

    2507.03472
  20. cs.LG arXiv submitted 2025-07-03
    RNA melting curve predicted from simulations at just two temperatures

    Yunrui Qiu +3 · “Latent Thermodynamic Flows: Unified Representation Learning and Generative Modeling of Temperature-Dependent Behaviors from Limited Data”

    2507.03174
  21. q-bio.QM arXiv submitted 2025-07-03
    A kite-shaped swarm dodges predators and survives longer

    Jonathan Karin +2 · “Enhancing Swarms Durability to Threats via Graph Signal Processing and GNN-based Generative Modeling”

    2507.03039
  22. physics.bio-ph arXiv submitted 2025-07-02
    Silencing mechanism sets the gene-noise footprint in 3D

    Massimiliano Semeraro +3 · “Modelling transcriptional silencing and its coupling to 3D genome organisation”

    2507.02150
  23. physics.bio-ph arXiv submitted 2025-07-02
    Synthetic angiograms hit 2.14 percent error on lung vessels

    Sunder Neelakantan +4 · “An in-silico lung phantom to assess the performance of pulmonary artery segmentation using angiogram”

    2507.01867
  24. cond-mat.soft arXiv submitted 2025-07-02
    Algae pick a direction by averaging two light beams

    Shantanu Raikwar +5 · “Phototactic Decision-Making by Micro-Algae”

    2507.01684
  25. q-bio.PE arXiv submitted 2025-07-02
    Noise shifts epidemic threshold and eases vaccination burden

    Sourav Chowdhury +3 · “Universal features of epidemic and vaccine models”

    2507.01310
  26. physics.bio-ph arXiv submitted 2025-07-01
    Clustered DNA breaks predict proton RBE without per-LET fitting

    Giulio Bordieri +5 · “Integrating nano- and micrometer-scale energy deposition models for mechanistic prediction of radiation-induced DNA damage and cell survival”

    2507.00929
  27. physics.chem-ph arXiv submitted 2025-07-01
    Torsion-aware force field claims DFT accuracy at 10x speed

    Qun Su +13 · “A Scalable and Quantum-Accurate Foundation Model for Biomolecular Force Field via Linearly Tensorized Quadrangle Attention”

    2507.00884
  28. q-bio.TO arXiv submitted 2025-07-01
    Breathing–heart locking cuts wasted cardiac power by up to 25%

    Josh Border +3 · “Cardiorespiratory coupling improves cardiac pumping efficiency in heart failure”

    2507.00597
  29. q-bio.CB arXiv submitted 2025-07-01
    Cell shape alone cannot explain spruce's directional creep

    Alessia Ferrara +1 · “Orthotropic Viscoelastic Creep in Cellular Scaffolds”

    2507.01071
  30. cond-mat.soft arXiv submitted 2025-07-01
    Charge regulation flips polymer bridging into weak repulsion

    Vijay Yadav +3 · “Charge Regulation Effect on Nanoparticles Interaction Mediated by Polyelectrolyte”

    2507.00549
  31. physics.bio-ph arXiv submitted 2025-07-01
    Loop-network odds obey resistor-circuit rules

    Andrea Bonato +4 · “Topological weight and structural diversity of polydisperse chromatin loop networks”

    2507.00520
  32. cond-mat.soft arXiv submitted 2025-06-30
    Motor chirality, not shape, rotates gliding microtubule crowds

    Madhuvanthi Guruprasad Athani +13 · “Gliding microtubules exhibit tunable collective rotation driven by chiral active forces”

    2507.00245
  33. physics.bio-ph arXiv submitted 2025-06-29
    Forward scattering delays bioconvection onset

    A. Rathi +2 · “Phototactic bioconvection under oblique collimated irradiation in a forward scattering suspension”

    2506.23233
  34. physics.bio-ph arXiv submitted 2025-06-29
    Forward scattering and top heating stabilize algal bioconvection

    S. K. Rajput +2 · “Thermal-phototactic bioconvection in a forward scattering algal suspension”

    2506.23224
  35. cond-mat.soft arXiv submitted 2025-06-28
    Active supercoiling traps threads to slow plasmid solutions

    Roman Sta\v{n}o +3 · “Actively induced supercoiling can slow down plasmid solutions by trapping the threading entanglements”

    2506.22842
  36. cond-mat.soft arXiv submitted 2025-06-28
    One hybrid stochastic model tracks protein

    D. Jasuja +1 · “Protein Drift-Diffusion in Membranes with Non-equilibrium Fluctuations arising from Gradients in Concentration or Temperature”

    2506.22695
  37. physics.bio-ph arXiv submitted 2025-06-27
    Find scalp spots where ultrasound reaches a brain target with PlanTUS

    Maximilian Lueckel +2 · “PlanTUS: A heuristic tool for prospective planning of transcranial ultrasound transducer placements”

    2506.22563
  38. q-bio.PE arXiv submitted 2025-06-27
    Savanna patterns can block or force grassland collapse

    Jelle van der Voort +4 · “Vegetation Patterning Can Both Impede and Trigger Critical Transitions from Savanna to Grassland”

    2506.22178
  39. cond-mat.soft arXiv submitted 2025-06-25
    Mushroom fibrils keep 80% of ideal adhesion over a vast size range

    C. Beteg\'on +3 · “Pull-off strength of mushroom-shaped fibrils adhered to rigid substrates”

    2506.20745
  40. quant-ph arXiv submitted 2025-06-25
    Quantum embedding brings free energies within reach for large biomolecules

    Jakob G\"unther +20 · “How to use quantum computers for biomolecular free energies”

    2506.20587
  41. physics.bio-ph arXiv submitted 2025-06-25
    Surface map predicts which protein spots plasma oxidizes

    Hanna-Friederike Poggemann +7 · “Phenylalanine modification in plasma-driven biocatalysis revealed by solvent accessibility and reactive dynamics in combination with protein mass spectrometry”

    2506.20205
  42. q-bio.BM arXiv submitted 2025-06-24
    Quench model matches polypeptide data from deep-sea smokers

    Ben Intoy +1 · “Modelling Statistics of Polypeptides in Emissions from Smokers Near Ocean Ridges”

    2506.20052
  43. q-bio.NC arXiv submitted 2025-06-24
    Fast brain links shape only the first 30 ms

    Rishikesan Maran +2 · “Modeling the influences of non-local connectomic projections on geometrically constrained cortical dynamics”

    2506.19800
  44. cond-mat.soft arXiv submitted 2025-06-23
    Friction memory, not the energy landscape, drives protein subdiffusion

    Anton Klimek +3 · “Hierarchical friction memory leads to subdiffusive configurational dynamics of fast-folding proteins”

    2506.18823
  45. q-bio.MN arXiv submitted 2025-06-23
    Coherent feed-forward loops amplify noise

    Mintu Nandi +2 · “Identifying the sources of noise synergy and redundancy in the gene expression of feed-forward loop motif”

    2506.18620
  46. physics.med-ph arXiv submitted 2025-06-23
    Dendritic spines mimic membrane exchange in diffusion MRI

    Kadir \c{S}im\c{s}ek +3 · “The role of dendritic spines in water exchange measurements with diffusion MRI: Time-Dependent Single Diffusion Encoding MRI”

    2506.18229
  47. cond-mat.soft arXiv submitted 2025-06-21
    Colony growth, not heat, drags tracers in young biofilms

    Fabian A. Garcia Daza +3 · “Diffusion of Tracer Particles in Early Growing Biofilms. A Computer Simulation Study”

    2506.17653
  48. physics.bio-ph arXiv submitted 2025-06-20
    Pexiganan shortens MscL's gating protrusion by 8 Å

    Sophie E. Ayscough +6 · “Neutron Reflectometry Reveals Conformational Changes in a Mechanosensitive Protein Induced by an Antimicrobial Peptide in Tethered Lipid Bilayers”

    2506.16972
  49. cond-mat.soft arXiv submitted 2025-06-19
    Curved active films order under both extensile and contractile stress

    Mehrana R. Nejad +1 · “Thin active nematohydrodynamic layers: asymptotic theories and instabilities”

    2506.16523
  50. q-bio.PE arXiv submitted 2025-06-19
    Rare strategic jumps flip rock-paper-scissors dominance

    J. Menezes +2 · “Saltatory targeting strategy in rock-paper-scissors models”

    2506.16284