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Every paper Pith has read. Search by title, abstract, or pith.
301 papers in physics.bio-ph · page 2
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Genotype decides if heterogeneity amplifies or suppresses selection
Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments
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Minimal model predicts tracer motion in crowded cells
A framework for modeling and inferring tracer diffusion in crowded environments
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Stochastic model predicts worm locomotion from neural signals
Predicting and controlling nonlinear neuro-mechanical locomotion dynamics
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Incommensurable costs fix vascular branching exponents
The Incommensurability Principle in Biological Transport
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Cells transmit molecular info to population size best at intermediate division steps
Optimal information transmission in a sequential model for cell division
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Rod shape and density dictate swarming
Shape anisotropy governs organization of active rods: Swarming, turbulence, flocking, and jamming
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EML operator yields single-block overshoot modules for biology models
Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics
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Live imaging cuts antiviral testing time by 26 hours
Continuous quantification of viral plaque dynamics using ultra-large-area label-free imaging enables rapid antiviral susceptibility testing
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Lumens act as active balloons in organ formation
Lumens as active balloons: a biological physics review
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Logarithmic method recovers adiabatic scaling in excitable systems
Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems
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Log centroid recovers Kramers scaling until noise boundary in excitable cells
Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems
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Pairwise model fits Scrabble graphs and distinguishes languages
Statistical mechanics for Scrabble predicts strategy, entropy and language
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Particle therapy cuts lymphocyte loss by 30% versus photons
Model-aided quantification of patient-specific benefit in mitigating radiation induced lymphopenia by particle therapy of cancer
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Active phase separation propels colloids indefinitely
Propelling catalytic structures using active phase separation
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Neural power cuts entropy per cycle to extend primate lifespan
Neural Investment as an Entropy-Budget Strategy: A Thermodynamic Derivation of Primate Longevity from the Principle of Biological Time Equivalence
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230 species share roughly one billion heartbeats per lifetime
The Lifetime Cardiac-Cycle Invariant in Endothermic Vertebrates: A 230-Species Comparative Dataset, Statistical Validation, and Explicit Falsifiability Criteria
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Cyanobacterial colonies resist lake mixing forces
On Linear and Non-Linear Mechanics of Cyanobacterial Colonies
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Time delay in gravity response drives root oscillations
Delayed control driven oscillations in plant roots
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Peptides differ in virion confinement near cells
Statistical analysis of virion-cell interactions mediated by peptide nanofibrils and peptide amphiphiles using STEM tomography
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Stochastic cell agents reproduce dose-rate effects in particle therapy
A stochastic agent-based extension of the GSM2 model for particle therapy: cell-cycle dynamics, dose-rate dependence, and fractionation effects
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Adhesion strength decides if tissues invade smoothly or fragment
Theory of adhesion-driven self-organisation in growing tissues
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AI learns to design engineered living materials
Can we teach generative artificial intelligence the design language of engineered living materials?
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Light and magnets program tunable random walks in active particles
Programmable Persistent Random Walks in Active Brownian Particles Govern Emergent Dynamics
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Generalized phase rule limits coexisting patterns in active mixtures
Coexistence of patterned phases in chemically active multicomponent mixtures
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More loops speed ring polymer segregation in cylinders
Kinetics of segregation of topologically-modified ring polymers in cylindrical confinement
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Combined models map protein binding orientations on nanoparticles
Orientation-Dependent Protein Binding at Nanoparticle Interfaces
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Docking and models agree on allergen binding orientations
Orientation-Dependent Protein Binding at Nanoparticle Interfaces
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Multi-time correlations tighten entropy production bounds
Hierarchical Reconstruction of Time-arrow from Multi-time Correlations
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Multi-time correlations tighten bounds on entropy production
Hierarchical Reconstruction of Time-arrow from Multi-time Correlations
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Bayesian method infers nucleic acid motif rates from ligation data
Bayesian Rate Inference for Sequence Motif Dynamics in Systems of Reactive Nucleic Acids
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DFTB dynamics recover slow vibrations in pigment spectral densities
Excitation of Low-Frequency Modes and the Effects of Protein Dynamics on Spectral Densities of Bacteriochlorophyll Molecules
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Thionine stabilizes DNA thermally at every concentration
Analysis of DNA thermal stability across a broad range of thionine concentrations
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Biophysical consistency separates true gene models from data fits
Learning biophysical models of gene regulation with probability flow matching
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Okra gel coating cuts scarring on brain electrodes
An in situ self-adaptive hydrogel coating enables seamless neural interfaces via okra mucilage polysaccharide and {\alpha}-helical peptide amphiphiles co-assembly
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Saffman crossover switches dipole pairs to two-dimensional dynamics
Quenched Dipole Pairs in Viscous Fluid Membranes across the Saffman Crossover: Integrable Hamiltonian Dynamics
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Active torques speed information transfer in turning flocks
Information transfer enhanced by non-reciprocity in a model of turning flocks
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Vector order parameter corrects DNA melting predictions
DNA melting: intra base-pair dynamics and a vector generalization of the Peyrard-Bishop-Dauxois model
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CPTES silane best for Bloch surface wave antibody biosensors
Comparative Silane Surface Functionalization Strategies for Enhanced Bloch Surface Wave Biosensing of Anti-SARS-CoV-2 Antibodies
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Vegetation patterns reveal if drylands are drying or recovering
Global remote sensing reveals vegetation clustering as a physical footprint of shifting aridity trends in drylands
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Bounded noise turns regular neuron firing into irregular bursts
Noise-accelerated Kramers Escape and Coherence Resonance in a 5D Neural Manifold
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Exact resistance derived for cylinder-blocked 2D orifice
Exact Resistance of an Orifice in a 2D Membrane Blocked by a Cylindrical Obstruction
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Mitochondrial shape triggers axonal jams and swelling
Mitochondrial mechanics nucleates axonal jamming and swelling
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Wave physics models partner dance as harmonic notation
Wave physics as a choreographic notation for partner dance
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Criticality signatures organize along brain hierarchy with opposite static and dynamic
Hierarchical organization of critical brain dynamics
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Single-cell patterning creates ordered bacterial films with optical effects
Shaping nematic order in bacterial films with single-cell resolution patterning
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Surface interactions set universal rules for population boom or bust
Birth, Death, and Replication at Surfaces: Universal Laws of Autocatalytic Dynamics
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GROMACS gains direct support for PyTorch neural network potentials
Enabling Biomolecular Simulations with Neural Network Potentials in GROMACS
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Neuron coupling to slow resources creates scale-invariant activity
A Critical Assessment of the Brain Criticality Hypothesis
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Brain correlations from memory effects
A Critical Assessment of the Brain Criticality Hypothesis
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Near-field effects boost excitonic coupling in protein dimers by factor of 5.6
Non-Equilibrium Dynamics of the Time-Dependent Excitonic Coupling in Fluorescent Protein Dimers