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INDEX

Every paper Pith has read and judged, in one searchable index.

1,166 reviewed papers in physics.bio-ph · newest first · page 2

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. cond-mat.soft arXiv submitted 2026-07-23
    One pressure number predicts which red cells clear the spleen

    Zhaojie Chai +4 · “Quantifying reticulocyte biomechanics in health and disease”

    2607.21810
  2. cond-mat.stat-mech arXiv submitted 2026-07-22
    Past a critical time, extractable dimer work goes infinite

    Ruicheng Bao · “Optimal Finite-Time Control of Nonreciprocal Brownian Dimers: Thermodynamic Anomaly and Multiple Transitions”

    2607.20420
  3. physics.bio-ph arXiv submitted 2026-07-22
    Push test measures soybean stem stiffness even with leaves on

    Akihito Kiyama +4 · “Static and Dynamic Estimation of Flexural Rigidity of Soybean”

    2607.20229
  4. physics.bio-ph arXiv submitted 2026-07-22
    A single phase transition can read a molecular distribution

    Mason N. Rouches +3 · “Decoding molecular distributional codes through collective instabilities”

    2607.19637
  5. physics.bio-ph arXiv submitted 2026-07-21
    Termites build the ground that guides their every move

    Yufei Xiao +6 · “Sensing, Traffic, and Construction in Termites”

    2607.19594
  6. quant-ph arXiv submitted 2026-07-21
    Symmetry rules push disordered quantum transport to near-perfect

    Hl\'er Kristj\'ansson +4 · “Efficient quantum transport in disordered Floquet networks”

    2607.19278
  7. cond-mat.stat-mech arXiv submitted 2026-07-21
    Kinesin's thermodynamic efficiencies all stay below 0.4

    Riku Kato +2 · “Energy Conversion, Fluctuation Suppression, and Information Transfer in the Thermodynamic Performance of Kinesin”

    2607.18905
  8. cond-mat.stat-mech arXiv submitted 2026-07-21
    Cascade collapse slows coarsening below the standard 1/2 exponent

    Priyanka D. Bhoyar +1 · “Deterministic cascade coarsening in a Bistable Gene Toggle model”

    2607.18891
  9. physics.med-ph arXiv submitted 2026-07-20
    Oxygen drops in FLASH are too small to cause sparing

    Brian W. Pogue +5 · “Review of oxygen measurement and relevance to the mechanisms of FLASH radiotherapy”

    2607.17974
  10. physics.bio-ph arXiv submitted 2026-07-20
    Feedback loops add cyclic noise to gene circuits

    Nashita Rahman +3 · “Feedback-mediated circulation and persistence of stochastic fluctuations in gene regulatory circuits”

    2607.17743
  11. q-bio.PE arXiv submitted 2026-07-20
    Model finds optimal ploidy: 15–30 chromosome copies

    Domenico Caudo +3 · “How genome redundancy can promote evolutionary innovation”

    2607.17687
  12. cond-mat.stat-mech arXiv submitted 2026-07-19
    Enzyme pacing creates a current that flips with cycle order

    Yuki Watanabe +2 · “Floquet Driving of Enzymatic Reactions: Counting Statistics and Long-Time Currents”

    2607.17072
  13. cond-mat.stat-mech arXiv submitted 2026-07-18
    Feedback control needs at least the passive entropy rate

    Matthew P. Leighton +4 · “On the Information Required for Feedback Control”

    2607.16639
  14. q-bio.SC arXiv submitted 2026-07-17
    A single timing inequality predicts transient bimodality

    Kaan \"Ocal +3 · “The Origins of Transient Bimodality”

    2607.16531
  15. q-bio.NC arXiv submitted 2026-07-17
    14 of 18 brain-organoid recordings show loop topology real firing can't explain

    Eve Bodnia +7 · “Emergent topological structure in spontaneous brain-organoid activity”

    2607.16517
  16. q-bio.CB arXiv submitted 2026-07-17
    Cell collision geometry governs how epithelial monolayers jam

    Ivana Pajic-Lijakovic +2 · “A phenomenological multiscale framework for orientational interactions and viscoelasticity in migrating epithelial monolayers”

    2607.15975
  17. physics.bio-ph arXiv submitted 2026-07-17
    Wavelet ratio reads chirp frequency exactly at any scale

    P. Argoul +2 · “Cauchy-Paul wavelet transforms revisited: A framework for intermittent non-sinusoidal oscillations”

    2607.15953
  18. physics.med-ph arXiv submitted 2026-07-16
    Simulator trained on 4 rotations forecasts 20 rotations of heart waves

    Adarsh Pashikanti +5 · “Differentiable Cardiac Electrophysiology Simulations for Dynamical State and Parameter Estimation”

    2607.15492
  19. math.DS arXiv submitted 2026-07-16
    One point makes any oscillation a uniform clock

    Jingdong Zhang +6 · “Ptolemy's Equant Equates to a Universal Dynamical Clock via Machine Learning”

    2607.15472
  20. nlin.AO arXiv submitted 2026-07-16
    Spite drives fairness when resources grow slowly

    Arunava Patra +2 · “Stochastic ultimatum game: Spite-driven resource feedback fosters fairness”

    2607.14914
  21. cond-mat.soft arXiv submitted 2026-07-16
    Crowder density alone triggers polymer collapse and reexpansion

    Monmee Phukan +2 · “Density-driven reentrant polymer transitions via saturable bridging crowders”

    2607.14838
  22. cond-mat.soft arXiv submitted 2026-07-16
    Three shape modes make vesicles swim at arbitrarily low activity

    Reiner Kree +1 · “Amoeboid swimming of active vesicles”

    2607.14714
  23. physics.bio-ph arXiv submitted 2026-07-16
    Epigenetic thresholds arise from one variational principle

    Jacobo Ayensa-Jim\'enez +1 · “Rate-Independent Epigenetics: a thermodynamically consistent framework for modelling epigenetic response”

    2607.14664
  24. cond-mat.soft arXiv submitted 2026-07-16
    Slow reaction memory makes droplets self-propel and flock

    Samuel Kovach +1 · “Memory-Driven Self-Propulsion and Flocking of Chemically Active Droplets”

    2607.14451
  25. physics.comp-ph arXiv submitted 2026-07-15
    Friction and release depth decide how an aneurysm implant seats

    Ratnadeep Pramanik +6 · “Contact-resolved deployment of the Contour Neurovascular System in patient-specific intracranial aneurysms”

    2607.13972
  26. physics.bio-ph arXiv submitted 2026-07-15
    Ice confines proteins instead of unfolding them

    Yanis R. Espinosa +2 · “Confinement effects on protein stability in a freezing water environment”

    2607.13966
  27. physics.bio-ph arXiv submitted 2026-07-15
    This paper shows that a two-compartment trick for building molecular structures fails…

    Richard Swiderski +2 · “Stochastic Yield Catastrophe in Delay-Facilitated Self-Assembly”

    2607.13902
  28. physics.bio-ph arXiv submitted 2026-07-14
    One number decides when noisy circadian clocks synchronize

    Chongbin Zheng +2 · “Robust topological oscillators govern a tunable phase transition to synchronized circadian rhythms”

    2607.13322
  29. cond-mat.soft arXiv submitted 2026-07-14
    Protein conductance reduces to the Fukui function

    Gabor Vattay · “Fundamental Relation between Conductance of Biomolecules and the Fukui Function”

    2607.13309
  30. physics.bio-ph arXiv submitted 2026-07-14
    Ribosome exit tunnel favors outward protein transit

    Felipe C. Nepomuceno +2 · “Reverse translocation of a nascent polypeptide through the ribosomal exit tunnels”

    2607.13195
  31. astro-ph.HE arXiv submitted 2026-07-14
    Supernova neutrinos amplify molecular handedness past 10 percent

    Amirmasoud Jannat +2 · “Supernova Neutrinos and the Origin of Biomolecular Homochirality”

    2607.12813
  32. cond-mat.soft arXiv submitted 2026-07-14
    Crowding entropy initiates endocytosis

    Jinjie Liu +2 · “Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle”

    2607.12766
  33. cond-mat.soft arXiv submitted 2026-07-14
    Crowding entropy starts endocytosis

    Jinjie Liu +2 · “Entropy-Driven Initiation and Cellular Uptake Mediated by Viscoelastic Cytoskeleton: A Kinetic Phase Diagram from Onsager Variational Principle”

    2607.12766
  34. physics.bio-ph arXiv submitted 2026-07-14
    Trees buffer trunk heat toward deep soil

    Jean-Baptiste Boul\'e +6 · “On seasonal trunk thermal buffering and its electrical signature in mature trees”

    2607.12760
  35. physics.flu-dyn arXiv submitted 2026-07-14
    Soft cilia bistable

    Hang Su +2 · “Emergent coordination and propulsion of a model spherical ciliate”

    2607.12436
  36. physics.bio-ph arXiv submitted 2026-07-13
    Brain signaling recast as multiscale wave mechanics

    Samina S. Masood +2 · “Multiscale Biophysical Waves (MBW): Conceptual and Theoretical Framework”

    2607.11745
  37. physics.bio-ph arXiv submitted 2026-07-13
    Brain waves convert to longitudinal modes at tissue interfaces

    Samina S. Masood +2 · “Multiscale Biophysical Waves (MBW): Conceptual and Theoretical Framework”

    2607.11745
  38. physics.bio-ph arXiv submitted 2026-07-13
    Radical-pair dipole model reproduces 24-degree bird disorientation

    Ali Soltanmanesh +4 · “Influence of Oscillating Magnetic Fields on the Electric Dipole Moment of Radical Pairs in Cryptochrome Based Magnetoreception”

    2607.20546
  39. cond-mat.soft arXiv submitted 2026-07-13
    Coloured noise traps tubulin excitons on proximal tryptophan pairs

    Chen Xin · “Molecular Dynamics-Derived Coloured Noise Mediates Anderson Localisation and Environment-Assisted Transport of Tryptophan Excitons in Tubulin”

    2607.11135
  40. cond-mat.soft arXiv submitted 2026-07-13
    Coloured noise localises tubulin excitons to proximal pairs

    Chen Xin · “Molecular Dynamics-Derived Coloured Noise Mediates Anderson Localisation and Environment-Assisted Transport of Tryptophan Excitons in Tubulin”

    2607.11135
  41. cond-mat.soft arXiv submitted 2026-07-13
    Coloured noise, not white, shapes tubulin exciton transport

    Chen Xin · “Molecular Dynamics-Derived Coloured Noise Mediates Anderson Localisation and Environment-Assisted Transport of Tryptophan Excitons in Tubulin”

    2607.11135
  42. physics.med-ph arXiv submitted 2026-07-13
    AQP4 loss cuts modeled glymphatic outflow by 40 percent

    Tanran Zhang +1 · “PVS-Facing AQP4 Transport and Dynamic Inter-Endfoot Gaps Regulate Gap-Dominated Glymphatic Clearance: Implications for Aging”

    2607.20544
  43. physics.bio-ph arXiv submitted 2026-07-12
    Bacteria and soil reshape each other at every scale

    Pablo Bravo +4 · “Life in a tight spot: Coupled dynamics of bacteria and soil across scales”

    2607.10734
  44. nlin.AO arXiv submitted 2026-07-12
    Closed slow-fast loop heals swarm connectedness after breaks

    Jyotiranjan Beuria · “Self-Healing Coordination in Cognitive Swarm Agents with Bloch-Type Perceptual Memory”

    2607.11960
  45. cond-mat.soft arXiv submitted 2026-07-12
    Enzymes push micron beads: strongest when stuck on the surface

    Mauricio Gomez +7 · “Enhanced diffusion of colloidal tracers due to enzymatic activity”

    2607.10646
  46. physics.comp-ph arXiv submitted 2026-07-11
    Exponential integrators free stochastic reaction-diffusion sims from tiny steps

    Elliot J. Carr · “Stochastic simulations of nonlinear reaction-diffusion equations using an exponential integrator”

    2607.10065
  47. physics.bio-ph arXiv submitted 2026-07-10
    Three noisy neurons mirror a quantum error-correcting code

    Ian Whitehouse +7 · “Quantum error correction and biological error correction: A structural analogy between qubits and neurons”

    2607.20534
  48. physics.bio-ph arXiv submitted 2026-07-09
    Sled dogs switch galloping stride patterns every few steps

    Benjamin Seleb +1 · “Acceleration-based clustering reveals frequent gait switching in sprint sled dogs”

    2607.08644
  49. physics.optics arXiv submitted 2026-07-09
    Cell temperature maps fail without matched calibration

    Araceli de Aquino Samper +3 · “Intracellular luminescence thermometry: A story of disagreement, trust, and hope”

    2607.08574
  50. physics.bio-ph arXiv submitted 2026-07-09
    Open brain-folding model matches primary sulci to 28 weeks

    Anne Kerachni +5 · “Open-source MRI-informed computational model of human cortical folding”

    2607.08534