INDEX
Every paper Pith has read and judged, in one searchable index.
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cond-mat.soft arXiv submitted 2025-01-28Chiral rotor pairs move straight or circle on their own
R. Maity +2 · “Active chiral rotors: hydrodynamics and chemotaxis”
2501.16835 -
physics.bio-ph arXiv submitted 2025-01-28Chromatin is a fractal globule and a Rouse chain at once
Andr\'es H. Cardona +3 · “Bridging spatial and temporal scales of developmental gene regulation”
2501.16799 -
cond-mat.soft arXiv submitted 2025-01-24Plant cells sit on the optimal ridge for packing chloroplasts
Nico Schramma +2 · “Optimal disk packing of chloroplasts in plant cells”
2501.14335 -
physics.bio-ph arXiv submitted 2025-01-23Charge position, not charge count, sets how much RNA a virus packs
Mohammadamin Safdari +4 · “Impact of the RNA Binding Domain Localization of the Protein Shell on Virus Particle Stability”
2501.13891 -
q-bio.QM arXiv submitted 2025-01-23Classical reaction rates overestimate membrane receptor uptake
Anil Cengiz +1 · “Reaction kinetics of membrane receptors: a spatial modeling approach”
2501.13837 -
cond-mat.soft arXiv submitted 2025-01-23Fibrous networks keep a memory of past pulls
Mainak Sarkar +2 · “Geometry-Driven Mechanical Memory in a Random Fibrous Matrix”
2501.13409 -
cond-mat.stat-mech arXiv submitted 2025-01-22Weighing desert bushes reveals hidden large-scale order
Ayana Ezoe +2 · “Weighted Point Configurations with Hyperuniformity: An Ecological Example and Models”
2501.12807 -
physics.comp-ph arXiv submitted 2025-01-22Transformer IDs knots 4,500 times faster than math
Zhiyu Zhang +2 · “Recognizing and generating knotted molecular structures by machine learning”
2501.12780 -
physics.bio-ph arXiv submitted 2025-01-22Cell heterogeneity, not average response, sets tumor treatment outcome
Uzi Harush +2 · “Efficient treatment of heterogeneous malignant cell populations”
2501.12691 -
physics.comp-ph arXiv submitted 2025-01-21Path sampling holds 70% efficiency on 3,500 GPUs
Nitin Malapally +4 · “Extreme scaling of the metadynamics of paths algorithm on the pre-exascale JUWELS Booster supercomputer”
2501.11962 -
physics.flu-dyn arXiv submitted 2025-01-20Squeezed larvae sprout extra vortices as plates close in
Bikram D. Shrestha +5 · “A universal hydrodynamic transition in confined marine invertebrate larvae”
2501.11744 -
cond-mat.soft arXiv submitted 2025-01-20Membrane stiffness sets how nanopillars kill bacteria
Akash Singh +3 · “Nanopillar-Driven Antibacterial Surfaces: Elucidating Bactericidal Mechanisms and Engineering Nanostructures for Enhanced Efficacy”
2501.11727 -
cond-mat.soft arXiv submitted 2025-01-20Volume changes, not surface bending energy, drive membranes
Yannick A. D. Omar +2 · “The $(2+\delta)$-dimensional theory of the electromechanics of lipid membranes: III. Constitutive models”
2501.11612 -
physics.chem-ph arXiv submitted 2025-01-20This paper measures how energy relaxation and vibrational coherence differ among three…
Masaaki Tsubouchi +4 · “Dependence of energy relaxation and vibrational coherence on the location of light-harvesting chromoproteins in photosynthetic antenna protein complexes”
2501.11308 -
physics.med-ph arXiv submitted 2025-01-19Soft liquid-metal coils wirelessly harvest 178 mW/cm2
Denis Rocha +4 · “Miniaturized liquid metal composite circuits with energy harvesting coils for battery-free bioelectronics and optogenetics”
2501.11016 -
physics.bio-ph arXiv submitted 2025-01-18One microtubule equation yields all three known soliton types
Slobodan Zdravkovi\'c · “Microtubules: dynamics, soliton waves, some roles in the cell”
2501.10614 -
physics.bio-ph arXiv submitted 2025-01-16Read a bacterium's magnetic moment from its U-turn width
Mara Smite +5 · “Explicit and fully automatic analysis of magnetotactic bacteria motion reveals the magnitude and length scaling of magnetic moments”
2501.09869 -
physics.bio-ph arXiv submitted 2025-01-16Derive Langevin reaction kernels that provably match overdamped limits
Samuel A. Isaacson +3 · “A Macroscopically Consistent Reactive Langevin Dynamics Model”
2501.09868 -
q-bio.NC arXiv submitted 2025-01-16Node-level modularity flags MCI patients who convert to Alzheimer's
Avalon Campbell-Cousins +4 · “Multiplex Nodal Modularity: A novel network metric for the regional analysis of amnestic mild cognitive impairment during a working memory binding task”
2501.09805 -
cond-mat.soft arXiv submitted 2025-01-16Wheel speeds set dry sliding friction: median is the key
Rohan Shah +1 · “Active contacts create controllable friction”
2501.09746 -
cond-mat.stat-mech arXiv submitted 2025-01-16For long DNA, looping time tracks inverse loop probability
Wout Laeremans +1 · “Theoretical Models for Tension-Dependent DNA Looping Time”
2501.09584 -
q-bio.PE arXiv submitted 2025-01-16Modular pH gradients control bacterial bands
John S. Chuang +2 · “Bacterial proliferation pattern formation”
2501.09546 -
physics.bio-ph arXiv submitted 2025-01-16Small catalyst population revives dormant bacteria
Eleonora Alfinito +1 · “The sleeping bacterium: shedding light on the resuscitation mechanism”
2501.09366 -
physics.bio-ph arXiv submitted 2025-01-15Hidden currents break enzyme waiting-time symmetry
D. Evan Piephoff +1 · “First-Passage Time Fluctuation Theorem and Thermodynamic Bound in Cooperative Biomolecular Networks”
2501.09087 -
cond-mat.stat-mech arXiv submitted 2025-01-15Scale-by-scale noise beats standard diffusion at a tenth of the steps
Kanta Masuki +1 · “Generative diffusion model with inverse renormalization group flows”
2501.09064 -
physics.chem-ph arXiv submitted 2025-01-15Hessian distillation makes force fields 20x faster
Ishan Amin +2 · “Towards Fast, Specialized Machine Learning Force Fields: Distilling Foundation Models via Energy Hessians”
2501.09009 -
cond-mat.soft arXiv submitted 2025-01-15WeTICA recovers unfolding kinetics at a tenth of the event time
Sudipta Mitra +2 · “WeTICA: A directed search weighted ensemble based enhanced sampling method to estimate rare event kinetics in a reduced dimensional space”
2501.08926 -
q-bio.TO arXiv submitted 2025-01-15First female pelvis fracture risk curves for lap-belt loads
Connor Hanggi +5 · “Female and Combined Male-Female Injury Risk Functions for the Anterior Pelvis Under Frontal Lap Belt Loading Conditions”
2501.08911 -
cond-mat.soft arXiv submitted 2025-01-15Square vs circle edge delays first disclination in curved crystals
Yankang Liu +3 · “General Solution for Elastic Networks on Arbitrary Curved Surfaces in the Absence of Rotational Symmetry”
2501.08894 -
cond-mat.soft arXiv submitted 2025-01-15Protein motion is fully ergodic on pico-to-nanosecond timescales
Luca Maggi · “Investigation on non-ergodicity of protein dynamics”
2501.08754 -
cond-mat.soft arXiv submitted 2025-01-15Machine learning can teach microswimmers to navigate and cooperate
Hartmut L\"owen +1 · “Towards Intelligent Active Particles”
2501.08632 -
cond-mat.soft arXiv submitted 2025-01-14Non-motile dumbbells gain collective motion above packing fraction 0.4
Urvi Mahendra Bora +1 · “Hydrodynamics-driven phase-locking and collective motility of sessile active dumbbells”
2501.08065 -
cond-mat.soft arXiv submitted 2025-01-143D loop windings decide whether bacteria expand or shrink them
Zeyang Mou +3 · “Simulations of Three-dimensional Nematic Guidance of Microswimmers”
2501.07816 -
physics.bio-ph arXiv submitted 2025-01-13Bacteria embed in cytoskeleton scaffolds without breaking the mesh
Katarina Matic +9 · “Active and passive crosslinking of cytoskeleton scaffolds tune the effects of cell inclusions on composite structure”
2501.07656 -
physics.bio-ph arXiv submitted 2025-01-12Only subsonic DNA kinks survive
Anna Batova +2 · “Stability analysis of solutions in the helicoidal Peyrard-Bishop model of DNA molecule”
2501.06967 -
q-bio.CB arXiv submitted 2025-01-12Nanorod surface charge sets bacterial SERS signal strength
Jia Dong +6 · “Interplay of Electrostatic Interaction and Steric Repulsion between Bacteria and Gold Surface Influences Raman Enhancement”
2501.06759 -
physics.bio-ph arXiv submitted 2025-01-09Phantom-tone tuning sharply boosts frequency selectivity
Justin Faber +4 · “A Mosquito-Inspired Theoretical Framework for Acoustic Signal Detection”
2501.05576 -
physics.bio-ph arXiv submitted 2025-01-09Five drag regimes for spinning caps inside curved membranes
Marco Vona +1 · “Rotational mobility in spherical membranes: The interplay between Saffman-Delbr\"uck length and inclusion size”
2501.05367 -
physics.bio-ph arXiv submitted 2025-01-09Flower fibre is stronger than cotton or jute
M. M. Rahman +4 · “Physical and chemical characterization of Saccharum spontaneum flower fibre: potential applications in thermal insulation and microbial fuel cells”
2501.05324 -
cond-mat.soft arXiv submitted 2025-01-09Passive droplets can destabilize inside active liquid crystals
Tanumoy Dhar +2 · “Stability of co-annular active and passive confined fluids”
2501.04918 -
physics.bio-ph arXiv submitted 2025-01-08Cell death collapses to one quasi-particle that filters stress
Felix Meige +4 · “Universal quasi-particle kinetics control the cell death decision”
2501.04862 -
physics.bio-ph arXiv submitted 2025-01-08Tractions can propel, not just resist, epithelial defects
Pradip K. Bera +3 · “Traction and Stress Control Formation and Motion of +1/2 Topological Defects in Epithelial Cell Monolayers”
2501.04827 -
physics.bio-ph arXiv submitted 2025-01-08Trapped enzymes report each catalytic cycle as a current jump
Tracy Quynh Ha +11 · “Real-Time, Label-free Electrical Transduction of Catalytic Events in a Single-Protein Redox Enzymatic Junction”
2501.04589 -
physics.chem-ph arXiv submitted 2025-01-08Memory friction pushes transition-path peaks above 1/2
Florian N. Br\"unig +3 · “Non-Markovianity increases transition path probability”
2501.04512 -
physics.med-ph arXiv submitted 2025-01-08Power Doppler can grade kidneys during machine perfusion
Yitian Fang +7 · “Enhancing kidney quality assessment: Power Doppler during normothermic machine perfusion”
2501.04457 -
math.NA arXiv submitted 2025-01-08Model shows how RhoA–FAK feedback keeps cell deformation constant
Sofie Verhees +2 · “Mathematical Modelling of Mechanotransduction via RhoA Signalling Pathways”
2501.04407 -
math.NA arXiv submitted 2025-01-07Low-entropy cuts beat expert partitioning in network simulations
Lukas Einkemmer +2 · “Automatic partitioning for the low-rank integration of stochastic Boolean reaction networks”
2501.04157 -
physics.bio-ph arXiv submitted 2025-01-07Red blood cell clumping boosts blood flow up to 30%
Mehdi Abbasi +1 · “Red blood cells aggregates transport for finite concentration”
2501.03860 -
physics.bio-ph arXiv submitted 2025-01-06Two antibiotic response regimes are generic
Barnabe Ledoux +1 · “Inhibition of bacterial growth by antibiotics : A minimal model”
2501.02944 -
physics.bio-ph arXiv submitted 2025-01-06Magnetic nanoparticles move a chromosome locus inside living cells
Fanny Delille (LPEM) +9 · “Sulfobetaine-Phosphonate Block Copolymer Coated Iron Oxide Nanoparticles for Genomic Locus Targeting and Magnetic Micromanipulation in the Nucleus of Living Cells”
2501.02836