INDEX
Every paper Pith has read and judged, in one searchable index.
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physics.bio-ph arXiv submitted 2025-04-20Distance-only coordinate stalls imatinib unbinding kinetics
Wouter Vervust +4 · “Path sampling challenges in large biomolecular systems: RETIS and REPPTIS for ABL-imatinib kinetics”
2504.14722 -
cond-mat.stat-mech arXiv submitted 2025-04-20One autocovariance curve separates three fractional-motion classes
Micha{\l} Balcerek +6 · “Multifractional Brownian motion with telegraphic, stochastically varying exponent”
2504.14546 -
physics.bio-ph arXiv submitted 2025-04-20Stacked networks lift lung EIT image quality by up to 27.5%
Zhenzhong Song +6 · “Pulmonary electrical impedance tomography based on deep recurrent neural networks”
2504.14521 -
cond-mat.soft arXiv submitted 2025-04-19Flagellar wrapping starts as a torque-induced buckling instability
Takuro Kataoka +3 · “Bacteria exploit torque-induced buckling instability for flagellar wrapping”
2504.14207 -
physics.bio-ph arXiv submitted 2025-04-18Simulation matches IC50 trends and ranks PfHT1 dual-site key residues
Decheng Kong +7 · “Molecular Determinants of Orthosteric-allosteric Dual Inhibition of PfHT1 by Computational Assessment”
2504.18559 -
physics.bio-ph arXiv submitted 2025-04-18One equation forms turtle keels and sets shell boundaries
Shin Nishihara +1 · “Local Ridge Formation and Domain Delimitation in Aggregation-Diffusion Equations”
2504.13411 -
q-bio.QM arXiv submitted 2025-04-17Aging is dissipation: gene maps reveal it cell by cell
Farhan Khodaee +3 · “The Dissipation Theory of Aging: A Quantitative Analysis Using a Cellular Aging Map”
2504.13044 -
cs.LG arXiv submitted 2025-04-17Static snapshots can replace time-course data in physics-informed learning
Pengtao Dang +6 · “Physics Informed Constrained Learning of Dynamics from Static Data”
2504.12675 -
q-bio.PE arXiv submitted 2025-04-16This paper compares three compartmental epidemic models (SI
Gustavo A. Sousa +6 · “Continuous and discrete compartmental models for infectious disease”
2504.13953 -
q-bio.PE arXiv submitted 2025-04-16This paper runs computer simulations of rock-paper-scissors ecosystems in which some…
D. Bazeia +3 · “Monitoring biodiversity on highly reactive rock-paper-scissors models”
2504.12054 -
physics.flu-dyn arXiv submitted 2025-04-16Algae swimming in a thin layer of liquid form regular convection patterns
S. Gore +6 · “Boundary Effects and Oxygen Deficiency-Driven Pattern Transitions in Algal Bioconvection”
2504.12362 -
cond-mat.stat-mech arXiv submitted 2025-04-15Estimator spots Maxwell demons in kinesin from single trajectories
Johan du Buisson +6 · “Hunting for Maxwell's Demon in the Wild”
2504.11329 -
physics.bio-ph arXiv submitted 2025-04-06New microscopy maps metabolism in single lysosomes
Jianpeng Ao +12 · “FILM: Mapping organellar metabolism by mid-infrared photothermal modulated fluorescence”
2504.04305 -
physics.flu-dyn arXiv submitted 2025-03-31Fish tail flexibility raises efficiency 70% over rigid fins
Sushrut Kumar +3 · “Flow-induced dorso-ventral deformation enhances propulsive efficiency in flexible caudal fins”
2503.23652 -
cond-mat.soft arXiv submitted 2025-03-26Contractile stresses form heterochromatin droplets
S. Alex Rautu +3 · “Active Hydrodynamic Theory of Euchromatin and Heterochromatin”
2503.20964 -
cond-mat.stat-mech arXiv submitted 2025-02-28Stochastic diffusion coefficients speed early boundary arrivals
Go Uchida +2 · “First passage time properties of diffusion with a broad class of stochastic diffusion coefficients”
2502.20705 -
physics.med-ph arXiv submitted 2025-02-14Fluorescence signals can shift mid-scan and still be resolved
Gabriel Siano +3 · “Sequential acquisition of fluorescence signals with changing fluorophore concentrations. Multivariate Curve Resolution with time measurements assistance”
2502.19431 -
physics.bio-ph arXiv submitted 2025-02-14Slow chromatin switches drive gene fluctuation patterns
Masaki Sasai +3 · “Landscapes and nonequilibrium fluctuations of eukaryotic gene regulation”
2502.10067 -
physics.bio-ph arXiv submitted 2025-02-13Tutorial teaches how to simulate membrane tethers and tubes
Maitane Mu\~noz-Basagoiti +5 · “A tutorial for mesoscale computer simulations of lipid membranes: tether pulling, tubulation and fluctuation”
2502.09798 -
cond-mat.soft arXiv submitted 2025-02-13Epithelial migration is a tunable defect-driven melting
Leonardo Puggioni +2 · “Collective migration and topological phase transitions in confluent epithelia”
2502.09554 -
physics.med-ph arXiv submitted 2025-02-12Magnetic fields expose hidden nodes of risky heart rhythm
Martina Nicoletti +6 · “Impact of Electric Spatially Discordant Alternans on Cardiac Magnetic Field”
2502.08480 -
physics.bio-ph arXiv submitted 2025-02-12Neural net predicts engineered tissue organisation almost instantly
Allison E. Andrews +4 · “Rapid prediction of organisation in engineered corneal, glial and fibroblast tissues using machine learning and biophysical models”
2502.08062 -
physics.flu-dyn arXiv submitted 2025-02-11Optimal flagellar helix radius is 0.2–0.3 µm
Baopi Liu +2 · “Effects of Flagellar Morphology on Swimming Performance and Directional Control in Microswimmers”
2502.07224 -
physics.bio-ph arXiv submitted 2025-02-10Stubborn motion blocks global order in head-to-tail crowds
Josu\'e Manik Nava-Sede\~no +3 · “Individual particle persistence antagonizes global ordering in populations of nematically-aligning self-propelled particles”
2502.07054 -
physics.bio-ph arXiv submitted 2025-02-10A proton gradient alone can sculpt a vesicle into a working crista
Yorgos Chatziantoniou +1 · “pH gradient-driven deformation of a crista-like vesicle”
2502.06582 -
cond-mat.soft arXiv submitted 2025-02-10Viscoelastic fluids show the same oscillatory modes as solids
Henning Reinken +1 · “Oscillatory collective motion in viscoelastic and elastic active fluids and solids under circular confinement”
2502.06312 -
cond-mat.soft arXiv submitted 2025-02-10Fusion plus slow input yields a 3/2 power law near a critical density
Bohan Lyu +1 · “Self-organized criticality driven by droplet influx and random fusion”
2502.06236 -
cond-mat.soft arXiv submitted 2025-02-10A fluctuating elastic mode boosts a trapped colloid’s diffusion
Juliette Lacherez (LOMA) +4 · “Enhanced diffusion over a periodic trap by hydrodynamic coupling to an elastic mode”
2502.06214 -
q-bio.BM arXiv submitted 2025-02-08QuantumDNA predicts how DNA mutations shift exciton lifetimes
Dennis Herb +5 · “QuantumDNA: A Python Package for Analyzing Quantum Charge Dynamics in DNA and Exploring Its Biological Relevance”
2502.06883 -
physics.bio-ph arXiv submitted 2025-02-08Antibodies clump where oil meets water
Jamini Bhagu +3 · “Nuclear Magnetic Resonance Study of Monoclonal Antibodies Near an Oil-Water Interface”
2502.05563 -
cond-mat.soft arXiv submitted 2025-02-06Head-tail shape alone steers microswimmers to walls
Derek C. Gomes +1 · “Shape-asymmetry and flexibility in active cross-stream migration in nonuniform shear”
2502.04316 -
physics.bio-ph arXiv submitted 2025-02-06Two-tone manikin maps solar and infrared heat by body zone
Kambiz Sadeghi +9 · “Resolving shortwave and longwave irradiation distributions across the human body in outdoor built environments”
2502.04216 -
physics.bio-ph arXiv submitted 2025-02-06Growth plus friction, not motility, can put cell colonies under tension
Chenyun Yao +1 · “Free Growth under Tension”
2502.03927 -
q-bio.BM arXiv submitted 2025-02-06Local frustration drives protein function and disease
R. Gonzalo Parra +3 · “Frustration In Physiology And Molecular Medicine”
2502.03851 -
physics.bio-ph arXiv submitted 2025-02-05Two-ratchet model explains prion-vesicle motion on neurons
Giulia Pozzi +6 · “Modeling the prion protein-mediated transport of extracellular vesicles on the neuron surface”
2502.03610 -
cond-mat.stat-mech arXiv submitted 2025-02-05Tumbling rate tunes spreading fronts from waves to diffusion
Matteo Paoluzzi · “Wave front propagation in the Active Coagulation Model”
2502.03372 -
physics.bio-ph arXiv submitted 2025-02-05Flagellar switch steepness grows with stator count
Henry H. Mattingly +1 · “Ultrasensitivity without conformational spread: A mechanical origin for non-equilibrium cooperativity in the bacterial flagellar motor”
2502.03290 -
cond-mat.soft arXiv submitted 2025-02-04Pusher swimmers scatter off soft boundaries
Sagnik Garai +3 · “Hydroelastic scattering and trapping of microswimmers”
2502.02462 -
q-bio.BM arXiv submitted 2025-02-04Pocket finder lifts blind docking to 54.9% valid poses
Yaroslav Balytskyi +3 · “RAPID-Net: Accurate Pocket Identification for Binding-Site-Agnostic Docking”
2502.02371 -
cond-mat.stat-mech arXiv submitted 2025-02-04Altruistic resource sharing synchronizes agents
Dongliang Zhang +3 · “An altruistic resource-sharing mechanism for synchronization: The energy-speed-accuracy tradeoff”
2502.02242 -
q-bio.NC arXiv submitted 2025-02-04Palm held near head lowers EEG power in pilot test
Jesus Acosta-Elias +3 · “Human fields and their impact on brain waves A pilot study”
2502.01939 -
cond-mat.mtrl-sci arXiv submitted 2025-02-03Thin-film grain boundaries push diffusion 9 orders past bulk
S. Petrushenko +3 · “Accelerated recrystallization of nanocrystalline films as a manifestation of the inner size effect of the diffusion coefficient”
2502.01422 -
physics.chem-ph arXiv submitted 2025-02-022D mineral flakes detect insecticide at 5 µg/L
Surbhi Slathia +9 · “Emamectin benzoate sensing using vivianenes (2D vivianites)”
2502.00813 -
physics.med-ph arXiv submitted 2025-01-31Pseudo-labeling censored patients cuts survival-prediction error 26.5%
Arman Gorji +5 · “Censor-Aware Semi-Supervised Survival Time Prediction in Lung Cancer Using Clinical and Radiomics Features”
2502.01661 -
cond-mat.soft arXiv submitted 2025-01-3117-number barcode matches expert speed measurements in minutes
Qiaopeng Chen +10 · “BARCODE: Biomaterial Activity Readouts to Categorize, Optimize, Design and Engineer for high throughput screening and characterization of dynamically restructuring soft materials”
2501.18822 -
cond-mat.soft arXiv submitted 2025-01-30Anisotropic protein model fits all three I-BAR sensing curves
Hiroshi Noguchi · “Curvature-sensing and generation by membrane proteins: a review”
2501.18311 -
physics.bio-ph arXiv submitted 2025-01-30One probe rig reveals distinct plant responses to touch versus shock
Sabrina Gennis +7 · “A multi-physics approach to probing plant responses: From calcium signaling to thigmonastic motion”
2501.18215 -
eess.IV arXiv submitted 2025-01-30Synthetic MRI beats ultrasound for prostate risk scoring
Mohammad R. Salmanpour +4 · “Influence of High-Performance Image-to-Image Translation Networks on Clinical Visual Assessment and Outcome Prediction: Utilizing Ultrasound to MRI Translation in Prostate Cancer”
2501.18109 -
physics.bio-ph arXiv submitted 2025-01-30Cable bacteria are proton conductors over 100-micron gaps
Bradley G. Lusk +9 · “Hydrated Cable Bacteria Exhibit Protonic Conductivity Over Long Distances”
2501.18651 -
physics.bio-ph arXiv submitted 2025-01-28Aluminum foil yields spike protein's Raman fingerprint
Monika Ghalawat +5 · “Study of SARS-CoV-2 Spike Protein by Surface Enhanced Raman Spectroscopy and Transmission Electron Microscopy”
2501.17212