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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 18

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. physics.bio-ph arXiv submitted 2025-05-29
    Cell height adds five paths to tissue rigidity transitions

    Natasha Cowley +2 · “Modelling bulk mechanical effects in a planar cellular monolayer”

    2505.23935
  2. cond-mat.soft arXiv submitted 2025-05-29
    Simulations show trap arrays can sort motile from immotile particles

    Vyacheslav R. Misko +2 · “Motility-dependent selective transport of active matter in trap arrays: Separation methods based on trapping-detrapping and deterministic lateral displacement”

    2505.23882
  3. physics.flu-dyn arXiv submitted 2025-05-29
    Two-temperature blood model passes second-law check

    M. Gorgone +3 · “A thermodynamical suspension model for blood”

    2506.00067
  4. quant-ph arXiv submitted 2025-05-29
    Quantum annealing reproduces chromatin domain statistics

    Tobias Kempe +2 · “Intermediate State Formation of Topologically Associated Chromatin Domains using Quantum Annealing”

    2505.23289
  5. physics.flu-dyn arXiv submitted 2025-05-28
    Air puff eye tests simulated 99% faster

    Osama M. Maklad +1 · “Reduced order modelling of air puff test for corneal material characterisation”

    2505.22495
  6. physics.bio-ph arXiv submitted 2025-05-28
    Fast immune cells trade directional accuracy for arrival speed

    Jiayi Liu +8 · “Chemotaxis of branched cells in complex environments”

    2505.21949
  7. q-bio.PE arXiv submitted 2025-05-27
    Vaccine gaps of 3–8 months keep epidemic costs lowest

    Samiran Ghosh +2 · “Effect of Vaccine Dose Intervals: Considering Immunity Levels, Vaccine Efficacy, and Strain Variants for Disease Control Strategy”

    2505.21132
  8. physics.med-ph arXiv submitted 2025-05-27
    Fractal and disorder metrics split benign from malignant mammograms

    Santanu Maity +2 · “Decoding Breast Cancer in X-ray Mammograms: A Multi-Parameter Approach Using Fractals, Multifractals, and Structural Disorder Analysis”

    2505.21080
  9. q-bio.CB arXiv submitted 2025-05-26
    Rosette formation comes down to curvature and tissue fluidity

    Mattia Miotto +8 · “Rosette formations as symmetry-breaking events: theory and experiment”

    2505.20543
  10. physics.bio-ph arXiv submitted 2025-05-26
    Variable rest length makes crossbridges stiff yet constant-force

    Mengjian Hua +1 · “Muscle Crossbridge Theory With Internal Crossbridge Dynamics”

    2505.20198
  11. physics.med-ph arXiv submitted 2025-05-26
    Four drivers and 30–60 Hz waves map whole-abdomen stiffness

    Jakob Schattenfroh +23 · “Technical recommendation on multiplex MR elastography for tomographic mapping of abdominal stiffness with a focus on the pancreas and pancreatic ductal adenocarcinoma”

    2505.20093
  12. physics.bio-ph arXiv submitted 2025-05-26
    Trained on simulations, a CNN reads iron mass from single-cell magnetic images

    A. Pointner +10 · “Optimizing SPION Labeling for Single-Cell Magnetic Microscopy”

    2505.20373
  13. cond-mat.stat-mech arXiv submitted 2025-05-26
    Starling turns may be solitons

    Andrea Cavagna +12 · “Spin-Waves without Spin-Waves: A Case for Soliton Propagation in Starling Flocks”

    2505.19665
  14. physics.bio-ph arXiv submitted 2025-05-25
    Simulation reproduces scattered platelet clot patterns

    Ali Lotfian +1 · “A Computational Approach for Modeling Platelet Adhesion Dynamics on Thrombogenic Surfaces”

    2505.18936
  15. physics.bio-ph arXiv submitted 2025-05-23
    Polymerization builds the tentacles cancer cells cling with

    Lucina Kainka +5 · “Microtubule polymerization generates microtentacles important in circulating tumor cell invasion”

    2505.18301
  16. physics.optics arXiv submitted 2025-05-23
    One rescaling law predicts skin heat at any beam angle

    Hongyun Wang +2 · “Asymptotic Solution for Skin Heating by an Electromagnetic Beam at an Incident Angle”

    2506.07317
  17. cond-mat.soft arXiv submitted 2025-05-23
    Oscillating flow steers, mixes, and separates swimming algae

    Hakan Osman Caldag +1 · “Fine-tuning the dispersion of active suspensions with oscillatory flows”

    2505.17788
  18. cond-mat.soft arXiv submitted 2025-05-23
    Actin-propelled beads flock by stealing each other's fuel

    Joseph D. Lopes +13 · “Emergence of Anti-chemotactic Flocking in Active Biomimetic Colloids”

    2505.17394
  19. physics.bio-ph arXiv submitted 2025-05-22
    Self-assembly on membranes detects receptors sharply

    Samuel L. Foley +1 · “Membrane-Associated Self-Assembly for Cellular Decision Making”

    2505.17290
  20. cond-mat.soft arXiv submitted 2025-05-22
    Droplet interfaces set phase behavior in chemically driven fluids

    Yongick Cho +1 · “Interfacial Effects Determine Nonequilibrium Phase Behaviors in Chemically Driven Fluids”

    2505.16824
  21. physics.bio-ph arXiv submitted 2025-05-22
    Cell migration switches on above a critical contact area

    Jonathan E. Ron +1 · “Theory of cell size regulation during migration in adhered cells”

    2505.16750
  22. physics.bio-ph arXiv submitted 2025-05-22
    Intermediate states speed up motors—especially under load

    Akihiro Fukuda +2 · “Acceleration of enzymatic reaction-diffusion kinetics by intermediate state”

    2505.17130
  23. physics.bio-ph arXiv submitted 2025-05-21
    Tame QD toxicity to unlock bioimaging and drug delivery

    Pronama Biswas +4 · “Quantum Dots as Functional Nanosystems for Enhanced Biomedical Applications”

    2505.15705
  24. q-bio.NC arXiv submitted 2025-05-20
    Cerebellar learning still fits the perceptron model

    Nicolas Brunel +2 · “From the perceptron to the cerebellum”

    2505.14355
  25. q-bio.NC arXiv submitted 2025-05-20
    Visual space is hyperbolic, and bell-shaped neural codes explain why

    Debasis Mazumdar +3 · “Investigation of the neural origin of non-Euclidean visual space and analysis of visual phenomena using information geometry”

    2505.13917
  26. physics.bio-ph arXiv submitted 2025-05-19
    Sphere-trained model predicts mosquito swarms around human heads

    Christopher Zuo +6 · “Predicting mosquito flight behavior using Bayesian dynamical systems learning”

    2505.13615
  27. physics.flu-dyn arXiv submitted 2025-05-19
    Tandem flapping wings stabilize at wavelength-multiple separations

    Fang Fang +3 · “Flow interactions and forward flight dynamics of tandem flapping wings”

    2505.13149
  28. cond-mat.soft arXiv submitted 2025-05-19
    Cholesterol's membrane effects emerge from a block-copolymer model

    Xiaoyuan Wang +3 · “Characterization of phospholipid-cholesterol bilayers as self-assembled amphiphile block polymers that contain headgroups”

    2505.12726
  29. physics.med-ph arXiv submitted 2025-05-18
    Rough plaque walls lower FFR and iFR at same stenosis

    Priyanshu Ghosh +4 · “Investigating the Impact of Arterial Irregularity On Clinical Parameters Using Reduced Order CFD Models In Stenosed Coronary Artery”

    2505.13536
  30. cond-mat.soft arXiv submitted 2025-05-17
    Two escape routes from single-file diffusion in narrow tubes

    Hanyang Wang +1 · “Polymer (imperfect) single-file diffusion: A phase diagram”

    2505.12164
  31. cond-mat.soft arXiv submitted 2025-05-17
    Two curved arcs reveal a membrane's hidden bending stiffness

    Oded Farago · “Measuring the mechanical properties of asymmetric membranes in computer simulations -- new methods and insights”

    2505.12033
  32. physics.med-ph arXiv submitted 2025-05-16
    DenseNet-121 beats ResNet-50 on brain cancer microscopy

    Mohnish Sao +2 · “Evaluation and optimization of deep learning models for enhanced detection of brain cancer using transmission optical microscopy of thin brain tissue samples”

    2505.11735
  33. physics.bio-ph arXiv submitted 2025-05-16
    Hunchback boundary precision peaks just shy of criticality

    Michael Vennettilli +2 · “Near-critical gene expression in embryonic boundary precision”

    2505.11212
  34. cond-mat.soft arXiv submitted 2025-05-16
    Crowding shrinks active droplets while swelling the dense phase

    Jacques Fries +6 · “Chemically active droplets in crowded environments”

    2505.11188
  35. cond-mat.soft arXiv submitted 2025-05-16
    Polymer segment motion obeys a universal 1/s center-of-mass law

    Kirill Polovnikov +1 · “Universal scaling of segment fluctuations in polymer and chromatin dynamics”

    2505.10943
  36. cond-mat.mtrl-sci arXiv submitted 2025-05-16
    Acid dose tunes green glow of lignin quantum dots

    Jelena Papan Djani\v{s} +7 · “Exploring the Interplay Between Formation Mechanisms and Luminescence of Lignin Carbon Quantum Dots from Spruce Biomass”

    2505.10886
  37. cond-mat.soft arXiv submitted 2025-05-15
    Condensates speed capsid assembly but packing caps yield

    Layne B. Frechette +4 · “Computer simulations show that liquid-liquid phase separation enhances self-assembly”

    2505.10400
  38. physics.bio-ph arXiv submitted 2025-05-15
    IR force microscope maps vancomycin binding on a single cell

    Maryam Ali +13 · “Nano-chemical cell-surface evaluation in photothermal spectroscopic imaging of antimicrobial interaction in model system Bacillus subtilis & vancomycin”

    2505.10249
  39. physics.med-ph arXiv submitted 2025-05-15
    AI stages ovarian cancer from tissue images at 97.62%

    Ashmit K Mishra +2 · “Automated grading and staging of ovarian cancer using deep learning on the transmission optical microscopy bright-field images of thin biopsy tissue samples”

    2505.09993
  40. math.NA arXiv submitted 2025-05-14
    Prolate waves shrink Ewald grids and speed MD by 3x

    Jiuyang Liang +4 · “Accelerating Molecular Dynamics Simulations using Fast Ewald Summation with Prolates”

    2505.09727
  41. physics.bio-ph arXiv submitted 2025-05-14
    Five periods explain microbiology's journey from miasma to CRISPR

    Daniil S. Gerassimov · “Great Short History of Microbiology Development as a Science”

    2505.09658
  42. physics.bio-ph arXiv submitted 2025-05-14
    Bulky sidechains trap twisted ends of amyloid fibrils

    Yasuhiro Oishi +4 · “Exploration of the potential energy surface for the conformational interconversion of the amyloid $\beta$ peptide at the fibril end”

    2505.09151
  43. physics.chem-ph arXiv submitted 2025-05-14
    SpectraMatcher automates vibronic peak assignment in a GUI

    Johanna Langner +3 · “SpectraMatcher: A Python Program for Interactive Analysis and Peak Assignment of Vibronic Spectra”

    2505.09060
  44. cond-mat.stat-mech arXiv submitted 2025-05-13
    Strong noise still lets remote clocks synchronize

    Benjamin Sorkin +1 · “Effective synchronization amid noise-induced chaos”

    2505.08942
  45. physics.bio-ph arXiv submitted 2025-05-13
    One chip reads molecule size and shape from escape times

    Xin Zhu +8 · “Measurements of molecular size and shape on a chip”

    2505.08452
  46. physics.bio-ph arXiv submitted 2025-05-12
    Graphene biosensor separates COVID-19 plasma by resonance shift

    Wenderson R. F. Silva +8 · “Graphene-based magnetoelastic biosensor for COVID-19 serodiagnosis”

    2505.08039
  47. cond-mat.soft arXiv submitted 2025-05-12
    Active glasses flip the Bauschinger memory effect

    Rashmi Priya +1 · “Inverse Bauschinger Effect in Active Ultrastable Glasses”

    2505.07356
  48. q-bio.NC arXiv submitted 2025-05-12
    Clustered calcium channels may explain giant auditory signals

    Jaeyun Yoo +1 · “Full simulation on the dynamics of auditory synaptic fusion: Strong clustering of calcium channel might be the origin of the coherent release in the auditory hair cells”

    2505.07273
  49. q-bio.PE arXiv submitted 2025-05-12
    CVTree builds living tree 10–1000x faster than MSA

    Yi-Fei Lu +2 · “CVTree for 16S rRNA: Constructing Taxonomy-Compatible All-Species Living Tree Effectively and Efficiently”

    2505.07227
  50. cs.LG arXiv submitted 2025-05-12
    Three axes explain why complexity measures disagree

    Nima Dehghani · “Compression, Regularity, Randomness and Emergent Structure: Rethinking Physical Complexity in the Data-Driven Era”

    2505.07222