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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 24

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. q-bio.NC arXiv submitted 2024-11-26
    Synapses encode data with joint information exceeding the sum of parts

    Xinhao Fan +1 · “Quantifying information stored in synaptic connections rather than in firing activities of neural networks”

    2411.17692
  2. physics.app-ph arXiv submitted 2024-11-26
    Room-temperature membranes make low-noise DNA nanopores

    Mohamed Yassine Bouhamidi +10 · “A Method for Fabricating CMOS Back-End-of-Line-Compatible Solid-State Nanopore Devices”

    2411.17416
  3. physics.flu-dyn arXiv submitted 2024-11-26
    Ciliated plankton read strain

    Christophe Eloy · “Hydrodynamics of flow sensing in plankton”

    2411.17316
  4. physics.bio-ph arXiv submitted 2024-11-26
    P2DFlow outmatches two baselines at protein ensemble generation

    Yaowei Jin +5 · “P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching”

    2411.17196
  5. physics.bio-ph arXiv submitted 2024-11-26
    Frequency control doubles the states a gene circuit can reach

    Rongrong Zhang +9 · “Synthetic frequency-controlled gene circuits unlock expanded cellular states”

    2411.17158
  6. quant-ph arXiv submitted 2024-11-25
    Fluorescent protein EYFP becomes an optically addressable spin qubit

    Jacob S. Feder +14 · “A fluorescent-protein spin qubit”

    2411.16835
  7. q-bio.NC arXiv submitted 2024-11-25
    Time-varying brain connectivity becomes a Gaussian process

    Johan Medrano +2 · “Dynamic Causal Models of Time-Varying Connectivity”

    2411.16582
  8. physics.bio-ph arXiv submitted 2024-11-25
    Firefly-swarm physics needs a real definition

    Raphael Sarfati · “Firefly swarms: What models for what physics?”

    2411.17751
  9. cond-mat.soft arXiv submitted 2024-11-25
    Small proteins can force lipid membranes into raft-sized domains

    Subhadip Basu +1 · “Mixing small proteins with lipids and cholesterol”

    2411.16423
  10. physics.bio-ph arXiv submitted 2024-11-25
    Inside shrimps, infinite periodicities form a devil's staircase

    Luiz F. B. Caixeta +3 · “Devil's staircase inside shrimp-shaped regions reveals periodicity of plateau spikes and bursts”

    2411.16373
  11. q-bio.PE arXiv submitted 2024-11-25
    Exact formula finds when drug switching helps or hurts

    Juan Magalang +4 · “Optimal switching strategies in multi-drug therapies for chronic diseases”

    2411.16362
  12. q-bio.BM arXiv submitted 2024-11-25
    A 10x gas cut buys XFEL protein resolution with 10x fewer patterns

    Tong You +2 · “Impact of gas background on XFEL single-particle imaging”

    2411.16259
  13. physics.optics arXiv submitted 2024-11-25
    Back-scattered light gives cross-talk-free dual-trap tweezers

    Md Arsalan Ashraf +1 · “Steerable dual-trap optical tweezers with confocal position detection using back-scattered light”

    2411.16256
  14. cond-mat.stat-mech arXiv submitted 2024-11-23
    At oddness κ>1, crowding speeds up a tracer instead of slowing it

    Pietro Luigi Muzzeddu +4 · “Self-diffusion anomalies of an odd tracer in soft-core media”

    2411.15552
  15. physics.bio-ph arXiv submitted 2024-11-22
    Resonator classifies free-flowing cells by photoacoustic whispers

    Jie Liao +5 · “Whispering-Gallery-Mode Resonators for Detection and Classification of Free-Flowing Nanoparticles and Cells through Photoacoustic Signatures”

    2411.15373
  16. physics.bio-ph arXiv submitted 2024-11-22
    Pressure unfolds R-phycocyanin in three steps

    Simeon Minic +7 · “Probing the structural stability of R-phycocyanin under pressure”

    2411.14948
  17. cond-mat.soft arXiv submitted 2024-11-22
    A two-temperature polymer pulls itself toward its hot end

    Adam H. T. P. H\"ofler +3 · “Entropic tug of war: Topological constraints spontaneously rectify the dynamics of a polymer with heterogeneous fluctuations”

    2411.14778
  18. cond-mat.soft arXiv submitted 2024-11-22
    Active drops on surfaces reach stable shapes

    Alejandro Martinez-Calvo +1 · “Morphodynamics of surface-attached active drops”

    2411.14636
  19. math.NA arXiv submitted 2024-11-21
    Burn-contraction surrogate hits R² of 0.99 and runs 235x faster

    Selma Husanovic +3 · “Deep operator network models for predicting post-burn contraction”

    2411.14555
  20. physics.bio-ph arXiv submitted 2024-11-21
    Firing variability flags working-memory mistakes

    Hengyuan Ma +2 · “Uncertainty Quantification in Working Memory via Moment Neural Networks”

    2411.14196
  21. physics.bio-ph arXiv submitted 2024-11-21
    Network localization can erase criticality's time-series fingerprint

    Juliane T. Moraes +1 · “Strong localization blurs criticality of time series for spreading phenomena on networks”

    2412.01842
  22. q-bio.QM arXiv submitted 2024-11-20
    Temperature dominates long-term mosquito-disease forecasts

    Marcio Maciel Bastos +3 · “Long-term predictive models for mosquito borne diseases: a narrative review”

    2411.13680
  23. q-bio.MN arXiv submitted 2024-11-20
    Competitive gene control steepens the switch: 1.6 + 1.8 = 3.4

    Amit Kumar Das +1 · “Competitive binding of Activator-Repressor in Stochastic Gene Expression”

    2411.13630
  24. physics.bio-ph arXiv submitted 2024-11-20
    At 300 hertz, liver elastography can separate fat from fibrosis

    Haritya Shah +1 · “Towards Linking Histological Changes to Liver Viscoelasticity: A Hybrid Analytical-Computational Micromechanics Approach”

    2411.13530
  25. cond-mat.soft arXiv submitted 2024-11-20
    Flexible viruses twist by shape

    Eric Grelet +1 · “Elucidating chirality transfer in liquid crystals of viruses”

    2411.13445
  26. physics.flu-dyn arXiv submitted 2024-11-20
    Vortex wakes pull fish schools into ordered diamond patterns

    Ji Zhou +2 · “Modeling the effect of hydrodynamic wakes in dynamical models of large-scale fish schools”

    2411.13406
  27. physics.bio-ph arXiv submitted 2024-11-20
    Quantum 'weak intrication' may explain acupuncture meridians

    Fran\c{c}ois Dubois (LMSSC) · “On Macroscopic Intricate States”

    2411.13092
  28. physics.bio-ph arXiv submitted 2024-11-19
    Plasmon coupling boosts bio-devices

    Itai Carmeli +1 · “Light-Matter Interactions in Photosynthetic Protein Attached to solids and Nanostructures”

    2411.12618
  29. cond-mat.soft arXiv submitted 2024-11-19
    Packing cells tighter can make them move faster

    Steven J. Chisolm +4 · “Transitions Between Cooperative and Crowding-Dominated Collective Motion in non-Jammed MDCK Monolayers”

    2411.12515
  30. physics.bio-ph arXiv submitted 2024-11-19
    Membrane voltage imprints a measurable quantum memory in ion channels

    Yu-Juan Sun +1 · “Active quantum memory: Exploring the quantum dynamical process of voltage-gated ion channel”

    2411.12362
  31. physics.bio-ph arXiv submitted 2024-11-19
    Exceptional points predict sudden extinction in PT-symmetric ecosystems

    Alexander Felski +1 · “Exceptional Points and Stability in Nonlinear Models of Population Dynamics having $\mathcal{PT}$ symmetry”

    2411.12167
  32. cond-mat.stat-mech arXiv submitted 2024-11-18
    A spectral gap shrinks graphs while preserving diffusion

    M. Schmidt +2 · “Spectral Coarse-Graining and Rescaling for Preserving Structural and Dynamical Properties in Graphs”

    2411.11991
  33. physics.optics arXiv submitted 2024-11-18
    Water calibration aligns Brillouin viscosity data across labs

    Pierre Bouvet +43 · “Consensus Statement on Brillouin Light Scattering Microscopy of Biological Materials”

    2411.11712
  34. physics.bio-ph arXiv submitted 2024-11-18
    Twin peaks separate elasticity from viscosity in ultrasound

    Shuvrodeb Adikary +2 · “Twin Peak Method for Estimating Tissue Viscoelasticity using Shear Wave Elastography”

    2411.11572
  35. q-bio.NC arXiv submitted 2024-11-17
    Brain decisions may sit near a critical transition

    Olga Tapinova +5 · “Integrated Ising Model with global inhibition for decision making”

    2411.11143
  36. physics.bio-ph arXiv submitted 2024-11-16
    Sponge glass fibers break the classical size-strength law

    Sayaka Kochiyama +1 · “Non-classical scaling of strength with size in marine biological fibers”

    2411.10672
  37. cond-mat.soft arXiv submitted 2024-11-15
    Blob size sets depletion force in brushes

    Ji Woong Yu +3 · “Depletion interaction between cylindrical inclusions in polymer brushes”

    2411.10607
  38. physics.med-ph arXiv submitted 2024-11-14
    Chordae thickness outranks branching in valve simulations

    Nicolas R. Mangine +11 · “Effect of Parametric Variation of Chordae Tendineae Structure on Simulated Atrioventricular Valve Closure”

    2411.09599
  39. physics.bio-ph arXiv submitted 2024-11-14
    Evolution finds sparse wing shapes faster than compact ones

    Sif F. Arnbjerg-Nielsen +5 · “A trade-off between hydrodynamic performance and morphological bias limits the evolution of symmetric lattice animal wings”

    2411.09456
  40. physics.bio-ph arXiv submitted 2024-11-14
    Gradient descent now fits force fields to many experiments at once

    Ryan K. Krueger +3 · “Fitting Coarse-Grained Models to Macroscopic Experimental Data via Automatic Differentiation”

    2411.09216
  41. q-bio.PE arXiv submitted 2024-11-13
    Two trail-following walkers form new diffusion classes

    Nick Dashti +2 · “Anomalous Diffusion and Emergent Universality in Coupled Memory-Driven Systems”

    2411.09092
  42. physics.flu-dyn arXiv submitted 2024-11-13
    Center of mass sets which of four ways a samara falls

    Zhao-Bang Hou +4 · “Aerodynamic Significance of Mass Distribution on Samara Descent”

    2411.08997
  43. q-bio.PE arXiv submitted 2024-11-13
    Growth-rate noise can speed up a cell population

    Arthur Genthon · “From noisy cell size control to population growth: when variability can be beneficial”

    2411.08512
  44. cond-mat.soft arXiv submitted 2024-11-12
    Nuclear size tunes phase boundaries in cell colony models

    Mattia Miotto +2 · “Non-equilibrium phase transitions in hybrid Voronoi models of cell colonies”

    2411.08012
  45. physics.bio-ph arXiv submitted 2024-11-11
    Curved epithelia bulge cells at defects via amplified forces

    Oliver M. Drozdowski +5 · “Cell bulging and extrusion in a three-dimensional bubbly vertex model for curved epithelial sheets”

    2411.07141
  46. astro-ph.EP arXiv submitted 2024-11-05
    Biosphere-environment correlations tighten as stellar luminosity rises

    Damian R Sowinski +2 · “Exo-Daisy World: Revisiting Gaia Theory through an Informational Architecture Perspective”

    2411.03421
  47. math-ph arXiv submitted 2024-11-05
    P-adic ultrametric spaces solve master equations with time-dependent rates

    \'Angel Mor\'an Ledezma · “Time-Varying Energy Landscapes and Temperature paths: Dynamic Transition Rates in locally Ultrametric Complex Systems”

    2411.03406
  48. cond-mat.stat-mech arXiv submitted 2024-10-25
    Active transport changes mutual information in 1D molecular channels

    Phanindra Dewan +1 · “Molecular communication in one-dimensional channels with active transport and crowding”

    2410.19411
  49. physics.bio-ph arXiv submitted 2024-10-12
    Permutations of pump sequences map drug-resistance space

    Fabio Deelan Cunden +2 · “Combinatorial Exploration of Multidrug Polyspecificity in Efflux Pumps”

    2410.09469
  50. physics.bio-ph arXiv submitted 2024-10-12
    Dissipative networks evolve decoupled fuel modules

    Bowen Shi +2 · “Evolutionary origin of the bipartite architecture of dissipative cellular networks”

    2410.09447