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Every paper Pith has read. Search by title, abstract, or pith.
301 papers in physics.bio-ph · page 6
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P-adic ultrametric spaces solve master equations with time-dependent rates
Time-Varying Energy Landscapes and Temperature paths: Dynamic Transition Rates in locally Ultrametric Complex Systems
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Active transport changes mutual information in 1D molecular channels
Molecular communication in one-dimensional channels with active transport and crowding
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Permutations of pump sequences map drug-resistance space
Combinatorial Exploration of Multidrug Polyspecificity in Efflux Pumps
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Dissipative networks evolve decoupled fuel modules
Evolutionary origin of the bipartite architecture of dissipative cellular networks
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Quantum-well microcavities can squeeze light across tens of GHz
Squeezed light in a semiconductor microcavity
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Cell division mainly forms cyanobacterial colonies
Fragmentation and aggregation of cyanobacterial colonies
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Fluorescent cell thermometers track non-temperature signals
Label-free mid-infrared photothermal microscopy revisits intracellular thermal dynamics: what do fluorescent nanothermometers measure?
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Quantum computers simulate zero-field NMR spectra
Prospects for NMR Spectral Prediction on Fault-Tolerant Quantum Computers
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Superradiance boosts quantum yields in neuroprotein structures
Quantum-enhanced photoprotection in neuroprotein architectures emerges from collective light-matter interactions
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Fused detector data sharpens lifetime images without learned hallucination
Single-sample image-fusion upsampling of fluorescence lifetime images
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RanGEF near nuclear envelope raises nuclear Ran levels
Spatio-Temporal Dynamics of Nucleo-Cytoplasmic Transport
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A geometric speed limit on response
Universal Response Inequalities Beyond Steady States via Trajectory Information Geometry
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Optimal transport simulates cells with shape and volume rules
Multicellular simulations with shape and volume constraints using optimal transport
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SARS-CoV2 keeps stronger ACE2 interface clusters than SARS-CoV1
From atomic to global connectivity in the structure of the SARS-CoV2-Human ACE2 receptor complex
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Bird radical-pair compass nears quantum bound but misses by 1-2 orders
On the optimality of the radical-pair quantum compass
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FP-IRL recovers rewards and transitions from trajectories without sampling
FP-IRL: Fokker--Planck Inverse Reinforcement Learning -- A Physics-Constrained Approach to Markov Decision Processes
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Matrix tomography recovers images at 900x depth-to-resolution in brain tissue
Adaptive Optical Multi-Spectral Matrix Approach for Label-free High-resolution Imaging through Complex Scattering Media
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Distance modulation revives magnetic sensitivity in coupled radical pairs
Driven spin dynamics enhances cryptochrome magnetoreception: Towards live quantum sensing
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Dipolar strength caps bacterial magnetic compass size
Macroscopic bioinspired magnetic active matter and the physical limits of magnetotaxis
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Method recovers underdamped dynamics from noisy discrete trajectories
Inferring the dynamics of underdamped stochastic systems
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Comb model of neurons yields Richardson diffusion
Richardson diffusion in neurons
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Droplet size switches actomyosin center from middle to edge
Centering and symmetry breaking in confined contracting actomyosin networks
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Basolateral fluids shape tissues by controlling hydration
Stay hydrated: Basolateral fluids shaping tissues
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DNA sequence design programs droplet temperature and dynamics
Sequence design-based control of DNA droplets formed from phase separation of DNA nanostructures
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Slow curing embeds active biomolecules in PDMS matrix
Complete inclusion of bioactive molecules and particles in polydime-thylsiloxane: a straightforward process under mild conditions
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Force feedback works in pulling but overestimates in fast hopping
Force Feedback Effects on Single Molecule Hopping and Pulling Experiments
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Future visual maximization produces animal-like swarms
Intrinsically motivated collective motion
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1% strain doubles ion conductance through graphene pores
Optimal transport and colossal ionic mechano-conductance in graphene crown ethers
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Three chemical patches optimize phoretic pump flow universally
Universal optimal geometry of minimal phoretic pumps
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Filament lengths create optimal cargo trapping zones in cells
Cytoskeletal filament length controlled dynamic sequestering of intracellular cargo
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Averaged Fisher info yields objective optimal dMRI designs
Optimal experimental design for biophysical modelling in multidimensional diffusion MRI
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Movement realism alters predicted animal encounter rates
How range residency and long-range perception change encounter rates
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UVC kills 97 percent of skin bacteria without harm
Advancement study in skin bacteria protection using UV light
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Lateral voltages alter ion channel activity in artificial bilayers
A Teflon-based system for applying multidirectional voltages to lipid bilayers as a novel platform for membrane proteins
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Noise makes biological strategies suboptimal for artificial sensors
Theoretical Limit Of Concentration Sensing of Single Receptor Artificial Biosensors
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Two-step equilibrium labeling matches kinetic proofreading error reduction
Error reduction in biosensors using secondary labeling
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ZMW apertures extend smFRET to 13.6 nm
Extending Single Molecule F\"orster Resonance Energy Transfer (FRET) Range Beyond 10 Nanometers in Zero-Mode Waveguides
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Neural network GSFE rivals atomic potentials on decoy detection
A simple neural network implementation of generalized solvation free energy for assessment of protein structural models
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BSPA reconstructs protein structures from seconds of liquid imaging
4D Liquid-phase Electron Microscopy of Ferritin by Brownian Single Particle Analysis
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Two conditions let cells assemble many protein complexes reliably
Towards a theory of assembly of protein complexes: lessons from equilibrium statistical physics
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DFT skin model identifies lipid-amino acid coupled vibrations
An Atomistic First-Principles Density Functional Theory Model for Single Layer Dry \textit{Stratum Corneum}
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Review updates methods for microvascular blood flow imaging
An Updated Review of Methods and Advancements in Microvascular Blood Flow Imaging
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Minimal KL rate bounds power to maintain nonequilibrium Markov distribution
Minimum Power to Maintain a Nonequilibrium Distribution of a Markov Chain
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DHA domains boost nAChR dimerization tenfold at low density
Untangling direct and domain-mediated interactions between nicotinic acetylcholine receptors in DHA-rich membranes
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Fresnel rings on flat pistons create converging vortex acoustic waves
Analytical Modeling and Design of Fresnel Lens Transducers
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Hydration free energies shrink with larger simulation boxes
System size dependence of hydration shell occupancy
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Different nutrient ratios create multiple stable microbe states
Multistability and regime shifts in microbial communities explained by competition for essential nutrients
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Virus surface packing triggers fluorescence brightening under pulses
Radiation Brightening from Virus-like Particles
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Oxygen drop from bacteria drives worm swarms via phase separation
Dynamics of pattern formation and emergence of swarming in C. elegans
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Sequence data lets one framework span residue to family coevolution
Inter-residue, inter-protein and inter-family coevolution: bridging the scales