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Every paper Pith has read. Search by title, abstract, or pith.
301 papers in physics.bio-ph · page 5
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Arterial geometry triggers resonant energy shift in pulsatile flow
Resonant spectral cascade in Womersley flow triggered by arterial geometry
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Interaction balance sets protein cluster size in raft domains
Coupling of Lipid Phase Behavior and Protein Oligomerization in a Lattice Model of Raft Membranes
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Diffusivity fluctuations in cells act like a Carnot engine
On the thermodynamic analogy of intracellular diffusivity fluctuations
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Discrete Markov chains converge to diffusion entropy production
Coarse-graining nonequilibrium diffusions with Markov chains
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Feasibility breaks before stability in large ecosystems
Feasibility and Single Parameter Scaling of Extinctions in Large Ecological Communities
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Activity-stress feedback orders tissues into soft elastic solids
Feedback-controlled epithelial mechanics: emergent soft elasticity and active yielding
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RNA structure ML models fail on new families
Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges
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Constant supply yields universal coarsening law in interface-limited emulsions
Kinetic theory of emulsions with matter supply
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Horizontal field in bilayer speeds channel inactivation
Genesis of a Horizontal Electric Field within the Lipid Bilayer: A Bilayer-Embedded Actuation Platform
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Topological edge states drive microtubule catastrophe patterns
Topological edge currents promote exploratory chromosome capture in microtubule dynamic instability
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Path integrals give exact correlation stats for nonlinear nets
Statistics of correlations in nonlinear recurrent neural networks
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Tuned antibiotic switches raise extinction odds for resistant strains
Optimization of sequential therapies to maximize extinction of resistant bacteria through collateral sensitivity
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Interference patterns track shifting exciton paths in single complexes
Fluorescence-detected Wavepacket Interferometry reveals time-varying Exciton Relaxation Pathways in single Light-Harvesting Complexes
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Optimization localizes emitters to resolve 30 nm fluorescent pairs
Single-frame super-resolution via Sparse Point Optimization
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Network transport operator derived from edge advection-reaction-diffusion
A multiscale theory for network advection-reaction-diffusion
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Fluidised tissues close gaps by ejecting boundary cells into bulk
Elasticity and plasticity of epithelial gap closure
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Cells raise lateral tension to fix lumen shape in cysts
Control of lumen morphology by lateral and basal cell surfaces
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Cells keep receptors half-occupied to adapt chemotaxis across wide concentrations
Perfect adaptation in eukaryotic gradient sensing using cooperative allosteric binding
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Stress-cycle yeast stay viable without stress
Adaptation to extreme stress under the growth-survival fitness trade-off
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Cost minimum sets KaiABC clock to ~21-hour rhythm
Physical Constraints on the Rhythmicity of the Biological Clock
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Multistage division stabilizes concentration-based cell size control
General mechanism for concentration-based cell size control
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Neurons derive resting potential from first principles
The unified cross-disciplinary model of the operation of neurons
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Label-free microscope images cell viscoelasticity twenty times faster
Label-free microscope for rheological imaging of cells
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Active supercoiling traps threads to slow plasmid solutions
Actively induced supercoiling can slow down plasmid solutions by trapping the threading entanglements
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Savanna patterns can block or force grassland collapse
Vegetation Patterning Can Both Impede and Trigger Critical Transitions from Savanna to Grassland
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Quantum embedding brings free energies within reach for large biomolecules
How to use quantum computers for biomolecular free energies
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Maximum entropy yields axon growth correlation exponent -1/2
Maximum-Entropy Model of Colored Noise in Superdiffusive Axonal Growth
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Ion pump information flow inverts during depolarization
Information thermodynamics of cellular ion pumps
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Self-assembly on membranes detects receptors sharply
Membrane-Associated Self-Assembly for Cellular Decision Making
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Tandem flapping wings stabilize at wavelength-multiple separations
Flow interactions and forward flight dynamics of tandem flapping wings
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Prolate waves shrink Ewald grids and speed MD by 3x
Accelerating Molecular Dynamics Simulations using Fast Ewald Summation with Prolates
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Strong noise still lets remote clocks synchronize
Effective synchronization amid noise-induced chaos
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Gradient ascent recovers 2 Å protein maps from 15-photon X-ray shots
Structure determination from single-molecule X-ray scattering images using stochastic gradient ascent
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Simple identity synchronizes generational and physical time in populations
The two-clock problem in population dynamics
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Symmetry alone classifies phases in 1D active solids
Symmetry-protected phases in a 1D active solid with mechanochemical feedback
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Estimator spots Maxwell demons in kinesin from single trajectories
Hunting for Maxwell's Demon in the Wild
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New microscopy maps metabolism in single lysosomes
FILM: Mapping organellar metabolism by mid-infrared photothermal modulated fluorescence
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Fish tail flexibility raises efficiency 70% over rigid fins
Flow-induced dorso-ventral deformation enhances propulsive efficiency in flexible caudal fins
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Contractile stresses form heterochromatin droplets
Active Hydrodynamic Theory of Euchromatin and Heterochromatin
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Stochastic diffusion coefficients speed early boundary arrivals
First passage time properties of diffusion with a broad class of stochastic diffusion coefficients
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Tutorial teaches how to simulate membrane tethers and tubes
A tutorial for mesoscale computer simulations of lipid membranes: tether pulling, tubulation and fluctuation
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Crowded ring polymers flip loop positions near sphere wall
Entropic organization of topologically modified ring polymers in spherical confinement
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Exact equality links response to transition correlations in Markov systems
Unified Linear Fluctuation-Response Theory Arbitrarily Far from Equilibrium
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Pullers shield odors better than pushers in turbulence
Effect of swimming mode on shielding of odor traces in turbulence
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Honeybees keep ventral optic flow constant in apertures
How Honeybees Perceive and Traverse Apertures
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Replicators gain productivity from environmental information
Information bounds production in replicator systems
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Synapses encode data with joint information exceeding the sum of parts
Quantifying information stored in synaptic connections rather than in firing activities of neural networks
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Nuclear size tunes phase boundaries in cell colony models
Non-equilibrium phase transitions in hybrid Voronoi models of cell colonies
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Curved epithelia bulge cells at defects via amplified forces
Cell bulging and extrusion in a three-dimensional bubbly vertex model for curved epithelial sheets
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Biosphere-environment correlations tighten as stellar luminosity rises
Exo-Daisy World: Revisiting Gaia Theory through an Informational Architecture Perspective