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INDEX

Every paper Pith has read and judged, in one searchable index.

1,290 reviewed papers in physics.bio-ph · newest first · page 5

Pith rank means recent reader upvotes with each upvote's ranking weight halved after 24 hours. The archive itself is sorted by arXiv submission date.

  1. cond-mat.stat-mech arXiv submitted 2026-06-22
    Time integration creates hyperuniform scaling in stochastic Turing patterns

    Anirban Mukherjee +1 · “Effective hyperuniformity in time-integrated stochastic Turing patterns”

    2606.23677
  2. cond-mat.stat-mech arXiv submitted 2026-06-22
    Noisy single-molecule data underestimates entropy production

    Todd R. Gingrich +3 · “Thermodynamic inference from noisy single-molecule time series”

    2606.23619
  3. physics.bio-ph arXiv submitted 2026-06-22
    DNA hairpin sensor separates intercalators from groove binders

    Kiara Thompson +7 · “Electrochemical DNA Hairpin Sensors for Differentiating Small Molecule Intercalation from Minor Groove Binding”

    2606.23561
  4. physics.bio-ph arXiv submitted 2026-06-22
    Rotational invariants yield 3D images of aerosolized viruses

    Tim B. Berberich +14 · “Imaging aerosolized viruses with an X-ray free-electron laser using single-particle rotational invariants”

    2606.23396
  5. physics.bio-ph arXiv submitted 2026-06-22
    Entropy-weighted cycles replace calendar time for measuring aging

    Mesfin Taye · “A Nonequilibrium Internal-Time Model of Aging: Entropy-Normalized Biological Proper Time and Repair Bifurcations”

    2606.23279
  6. physics.bio-ph arXiv submitted 2026-06-21
    Method extracts geometric phase from noisy sperm and nematode data

    Pyae Hein Htet +1 · “Data-driven geometric phase in biological locomotion”

    2606.22440
  7. physics.bio-ph arXiv submitted 2026-06-21
    Glass stretching creates physical model for tissue deformation

    Gopika Madhu +5 · “Glass-based physical models for tissue mechanics”

    2606.22281
  8. cond-mat.soft arXiv submitted 2026-06-20
    Photoswitching generates pressure pulses matching fractional wave model

    Tom Rosenstein +3 · “Generation of two-dimensional pulses in lipid monolayers by rapid photoswitching”

    2606.22003
  9. cond-mat.soft arXiv submitted 2026-06-19
    Nonlocal sensing yields hybrid phase separation with internal order

    Benchang Wu +4 · “Nonlocal Sensing Drives Hybrid Phase Separation in Brownian Matter”

    2606.21464
  10. physics.bio-ph arXiv submitted 2026-06-19
    Histidine mutation lowers barriers in UPO enzyme simulations

    Hanna-Friederike Poggemann +3 · “Computationally guided modifications of CviUPO to improve catalytic activity”

    2606.21370
  11. cond-mat.mtrl-sci arXiv submitted 2026-06-18
    Silicon biosensors reach lab sensitivity but stall before clinic

    Ang Liu +3 · “Silicon Nanostructures for Biosensing: From Field-Effect Transistors to Photonic Resonators, and the Long Road to the Clinic”

    2606.20902
  12. q-bio.PE arXiv submitted 2026-06-18
    Quantum Game of Life fits West Nile virus spread in Italy

    Andrea Fontana +5 · “West Nile virus outbreak in Italy modelled with the quantum Game of Life”

    2606.20489
  13. physics.bio-ph arXiv submitted 2026-06-18
    Nanolipogels keep friction at 0.0001 while releasing drugs

    Panpan Zhao* +5 · “Cytoskeleton-inspired, adaptive nanolipogels as superlubricating delivery vehicles”

    2606.19923
  14. cond-mat.soft arXiv submitted 2026-06-18
    Epithelial cells form mixed polar-nematic defect phases

    Tianxiang Ma +4 · “Epithelia Realize Nematopolar Topological Defect Structures”

    2606.19844
  15. physics.soc-ph arXiv submitted 2026-06-17
    Sign error inverted US east-west axis in circadian health study

    Jose Maria Martin-Olalla +1 · “Methodological guidelines for circadian modeling of Daylight Saving Time: application to the United States”

    2606.19541
  16. cond-mat.stat-mech arXiv submitted 2026-06-17
    Gamma-distributed temperatures yield a q-exponential law

    Lucas Squillante +3 · “A few remarks on hyperstatistics and some applications”

    2606.20735
  17. cond-mat.stat-mech arXiv submitted 2026-06-17
    Hyperstatistics models Brownian motion and brain dynamics

    Lucas Squillante +3 · “A few remarks on hyperstatistics and some applications”

    2606.20735
  18. cond-mat.soft arXiv submitted 2026-06-17
    Weak cylinder deformation creates new sphere-packing phases

    Xuebin Wang +2 · “Chiral Packings in Cylinders are Ultrasensitive to Confinement Deformation”

    2606.19082
  19. physics.bio-ph arXiv submitted 2026-06-17
    Human groups evolved external entropy production for fire control

    Yasuji Sawada +1 · “External Entropy Production and Human Evolution toward Multi-body Life”

    2606.19066
  20. physics.bio-ph arXiv submitted 2026-06-17
    Symmetric relaxation stabilizes 2D cell networks against T1 events

    Kai Xu +4 · “A symmetric relaxation method for entire two-dimensional cellular networks and its implications”

    2606.18604
  21. physics.chem-ph arXiv submitted 2026-06-16
    Jeffreys measure normalizes Bayesian ensemble posteriors

    Ivan Gilardoni +1 · “Bayesian Sampling of Structural Ensembles: The Role of Ensemble-Counting Measures”

    2606.18495
  22. cond-mat.stat-mech arXiv submitted 2026-06-16
    Exact cluster counts derived for 1D ring lattice gases

    Thomas Alfonsi +3 · “Equilibrium cluster statistics of cooperative and anticooperative binding on finite one-dimensional rings”

    2606.18020
  23. q-bio.CB arXiv submitted 2026-06-16
    Four regimes classify chemotactic fronts of mixed cell populations

    Giulia L. Celora +3 · “A nonlinear theory for chemotactic fronts of mixed populations”

    2606.17891
  24. physics.bio-ph arXiv submitted 2026-06-15
    Active cell behaviors bypass passive sensing limits

    Andrew Mugler +1 · “Cell sensing: from physical limits to active behaviors”

    2606.17239
  25. physics.bio-ph arXiv submitted 2026-06-15
    C++ platform adds real-time multi-camera previews to μManager

    Tianyi Zhao +2 · “ScopeOne: Flexible and C++-driven Microscope Control Platform”

    2606.19384
  26. physics.bio-ph arXiv submitted 2026-06-15
    Action potentials are not solitons

    J\"uri Engelbrecht +2 · “Action potentials and solitons”

    2607.20496
  27. physics.bio-ph arXiv submitted 2026-06-13
    Biofilm drug testing reduces to four imaging questions

    Seongsoo Lee +1 · “Imaging biofilms in three dimensions: modalities, quantitative readouts, and the path to four-dimensional measurement”

    2606.15254
  28. physics.med-ph arXiv submitted 2026-06-11
    Beam-membrane model adds vocal fold posturing at low cost

    Mohamed A. Serry +2 · “A beam--membrane biomechanical vocal fold model incorporating posturing and glottal conformation”

    2606.13480
  29. physics.bio-ph arXiv submitted 2026-06-11
    Review connects bacterial cell motility to group behaviors

    Anna Mas (CBS) +2 · “Bacterial Motility Across Scales: Mechanisms, Live Imaging, and Quantitative Analysis”

    2606.13059
  30. cond-mat.stat-mech arXiv submitted 2026-06-11
    Proofreading raises both speed and accuracy when stall fluctuations are large

    Arup Biswas +1 · “When proofreading improves both speed and accuracy”

    2606.12795
  31. cond-mat.soft arXiv submitted 2026-06-10
    Pinned boundaries delay contraction in active gels

    Aniket Marne +8 · “Pinned Boundaries Delay Contraction and Shape Stress Relaxation in Active Gels”

    2606.11850
  32. cond-mat.soft arXiv submitted 2026-06-09
    Nonlocal curvature feedback keeps noisy filaments straight

    Ludwig A. Hoffmann +1 · “How to grow a straight filament”

    2606.11080
  33. physics.bio-ph arXiv submitted 2026-06-09
    Motion polarizes actin regulator to trigger cell crawling

    Pierre Recho · “Spontaneous polarization for protrusion-driven cell crawling”

    2606.10878
  34. cond-mat.soft arXiv submitted 2026-06-09
    NANOG forms self-limiting micelles that gel and stabilize DNA entanglements

    Amandine Hong-Minh +6 · “NANOG assembles into self-limiting aging micelles that drive a sol-gel transition and modulate DNA dynamics”

    2606.10779
  35. cond-mat.soft arXiv submitted 2026-06-09
    Cell sliding propels diatom chains faster than waves

    Julien le Dreff +1 · “Moving backward to go faster: Diatom-inspired sliding reveals efficient modes of locomotion”

    2606.10513
  36. cond-mat.soft arXiv submitted 2026-06-09
    Swim stress excluded from local stress tensor in inertial active particles

    Chandranshu Tiwari +2 · “Virial stress in systems of active Brownian particles in the presence of translational and rotational inertia”

    2606.10486
  37. cond-mat.soft arXiv submitted 2026-06-09
    Finite relaxation rate drives phase sequence in active matter

    Rajneesh Kumar +2 · “Finite-Time Orientational Relaxation Restructures Collective Motion in Polar Active Matter”

    2606.10474
  38. eess.IV arXiv submitted 2026-06-08
    POPSICLE benchmark standardizes cryoET ML evaluation

    Jonathan Schwartz +8 · “POPSICLE: Benchmark Datasets for Segmentation and Localization in CryoET”

    2606.10255
  39. physics.soc-ph arXiv submitted 2026-06-08
    Chitosan packaging shows life-cycle trade-offs that offset its green appeal

    Maria Cosic +11 · “The Sustainability Paradox of Biodegradable Packaging: A Life Cycle Perspective on Chitosan-Based Food Packaging”

    2606.20654
  40. q-bio.PE arXiv submitted 2026-06-08
    Mean fitness relaxes inversely with time after catastrophe

    Jesse Young Lin +5 · “Natural Selection in the Wake of Catastrophe”

    2606.09040
  41. physics.bio-ph arXiv submitted 2026-06-06
    Fork speed variation produces Erlang S-phase times

    Chinmaya Pradhan +4 · “DNA Replication under Thermal, Chemical, and Genotoxic Stress”

    2606.08138
  42. physics.bio-ph arXiv submitted 2026-06-05
    Shallow gradients hide non-Gaussian effects in chemotaxis

    Nicholas A. Licata · “The Chemotactic Index for Spatial Gradient Sensing”

    2606.07793
  43. cs.LG arXiv submitted 2026-06-04
    Flux matching extracts pathways and coordinates from reactive data

    Rishal Aggarwal +3 · “Reactive Flux Matching: Mechanism Discovery and Adaptive Sampling of Rare Events”

    2606.06295
  44. physics.flu-dyn arXiv submitted 2026-06-04
    Flight data from 400 species matches turbulence scaling

    Ariane Gayout +2 · “Turbulence-based parametrization of animal flight”

    2606.06269
  45. physics.bio-ph arXiv submitted 2026-06-04
    Simple neural nets enable autonomous microswimmer gaits

    Ruma Maity +4 · “Emergent swimming strategies of a smart three-bead swimmer”

    2606.05984
  46. cs.LG arXiv submitted 2026-06-03
    Bayesian evidence selects smallest reliable TCN for glucose forecasts

    Md Azharul Islam +3 · “Evidence-Guided Neural Architecture Selection under Uncertainty for Subject-Specific Blood Glucose Forecasting”

    2606.05373
  47. physics.comp-ph arXiv submitted 2026-06-03
    GEMINI quantifies incomplete edge linking in spatial networks

    Yu Tian +2 · “GEMINI: Generalized Ensnarlment Measure from Incomplete-linkage of Network-network Interactions”

    2606.05153
  48. physics.bio-ph arXiv submitted 2026-06-03
    Analytical SAS and MD simulations share one theoretical framework

    Kristian Lytje +2 · “Small-angle solution scattering: from fundamental theory to practical approximations”

    2606.05007
  49. physics.flu-dyn arXiv submitted 2026-06-03
    Villi pendular waves shear mucus more than they pump fluid

    Rohan Vernekar +3 · “Energetics, shearing and pumping efficiency of propagating contractions over villi-patterned wall”

    2606.04831
  50. cond-mat.soft arXiv submitted 2026-06-03
    Unstructured regions limit protein filament length via flexibility

    Nynke Marije Hettema +4 · “Tunable supramolecular polymerization from protein charge heterogeneity and architecture”

    2606.04766