INDEX
Every paper Pith has read and judged, in one searchable index.
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quant-ph arXiv submitted 2024-08-18Quantum-well microcavities can squeeze light across tens of GHz
Xuan Zuo +4 · “Squeezed light in a semiconductor microcavity”
2408.09323 -
cond-mat.soft arXiv submitted 2024-07-30Cell division mainly forms cyanobacterial colonies
Yuri Z. Sinzato +4 · “Fragmentation and aggregation of cyanobacterial colonies”
2407.21115 -
physics.bio-ph arXiv submitted 2024-06-24Fluorescent cell thermometers track non-temperature signals
Keiichiro Toda +6 · “Label-free mid-infrared photothermal microscopy revisits intracellular thermal dynamics: what do fluorescent nanothermometers measure?”
2406.16265 -
quant-ph arXiv submitted 2024-06-13Quantum computers simulate zero-field NMR spectra
Justin E. Elenewski +2 · “Prospects for NMR Spectral Prediction on Fault-Tolerant Quantum Computers”
2406.09340 -
physics.bio-ph arXiv submitted 2024-05-09Superradiance boosts quantum yields in neuroprotein structures
Hamza Patwa +2 · “Quantum-enhanced photoprotection in neuroprotein architectures emerges from collective light-matter interactions”
2406.15403 -
eess.IV arXiv submitted 2024-04-19Fused detector data sharpens lifetime images without learned hallucination
Valentin Kapit\'any +7 · “Single-sample image-fusion upsampling of fluorescence lifetime images”
2404.13102 -
physics.bio-ph arXiv submitted 2024-04-10RanGEF near nuclear envelope raises nuclear Ran levels
S. Alex Rautu +2 · “Spatio-Temporal Dynamics of Nucleo-Cytoplasmic Transport”
2404.06688 -
cond-mat.stat-mech arXiv submitted 2024-03-16A geometric speed limit on response
Jiming Zheng +1 · “Universal Response Inequalities Beyond Steady States via Trajectory Information Geometry”
2403.10952 -
q-bio.QM arXiv submitted 2024-02-26Optimal transport simulates cells with shape and volume rules
Antoine Diez +1 · “Multicellular simulations with shape and volume constraints using optimal transport”
2402.17086 -
physics.bio-ph arXiv submitted 2024-02-08SARS-CoV2 keeps stronger ACE2 interface clusters than SARS-CoV1
Varsha Subramanyan +4 · “From atomic to global connectivity in the structure of the SARS-CoV2-Human ACE2 receptor complex”
2402.05416 -
quant-ph arXiv submitted 2024-01-05Bird radical-pair compass nears quantum bound but misses by 1-2 orders
Luke D. Smith +3 · “On the optimality of the radical-pair quantum compass”
2401.02923 -
cs.LG arXiv submitted 2023-06-17FP-IRL recovers rewards and transitions from trajectories without sampling
Chengyang Huang +6 · “FP-IRL: Fokker--Planck Inverse Reinforcement Learning -- A Physics-Constrained Approach to Markov Decision Processes”
2306.10407 -
physics.optics arXiv submitted 2023-06-15Matrix tomography recovers images at 900x depth-to-resolution in brain tissue
Yiwen Zhang +5 · “Adaptive Optical Multi-Spectral Matrix Approach for Label-free High-resolution Imaging through Complex Scattering Media”
2306.08793 -
quant-ph arXiv submitted 2022-06-15Distance modulation revives magnetic sensitivity in coupled radical pairs
Luke D. Smith +4 · “Driven spin dynamics enhances cryptochrome magnetoreception: Towards live quantum sensing”
2206.07355 -
cond-mat.soft arXiv submitted 2021-11-09Dipolar strength caps bacterial magnetic compass size
N\'estor Sep\'ulveda +6 · “Macroscopic bioinspired magnetic active matter and the physical limits of magnetotaxis”
2111.04889 -
physics.bio-ph arXiv submitted 2020-02-16Method recovers underdamped dynamics from noisy discrete trajectories
David B. Br\"uckner +2 · “Inferring the dynamics of underdamped stochastic systems”
2002.06680 -
physics.bio-ph arXiv submitted 2019-09-06Fuel-triggered swimmers out-eat passive rivals in food bursts
Holger Merlitz +4 · “Pseudo-chemotaxis of active Brownian particles competing for food”
1909.02779 -
cond-mat.soft arXiv submitted 2019-09-06Chiral torque gradients drive one-way cell migration
Takaki Yamamoto +2 · “Collective cell migration of epithelial cells driven by chiral torque generation”
1909.02771 -
physics.comp-ph arXiv submitted 2019-09-06Stokes-flow tensors restore hydrodynamics to solvent-free membranes
Mohsen Sadeghi +1 · “Hydrodynamic coupling for particle-based solvent-free membrane models”
1909.02722 -
physics.bio-ph arXiv submitted 2019-09-05TEM image disorder score rises 70% in cancer
Prakash Adhikari +4 · “Nanoscale structural alterations in cancer cells to assess anti-cancerous drug effectiveness in cancer treatment using TEM imaging”
1909.02665 -
cond-mat.stat-mech arXiv submitted 2019-09-05Spend energy and a biochemical clock's wiring stops mattering
Clara del Junco +1 · “Robust oscillations in multi-cyclic models of biochemical clocks”
1909.02534 -
physics.bio-ph arXiv submitted 2019-09-05A cellular automaton grows tumour-lured capillary networks
Sounak Sadhukhan +1 · “Tumour Induced Angiogenesis and Its Simulation”
1909.02462 -
physics.app-ph arXiv submitted 2019-09-05Simulated nano-oscillator detects even one magnetic nanoparticle
Renata Saha +3 · “Detection of magnetic nanoparticles (MNPs) using spin current nano-oscillator (SCNO) biosensor: A frequency-based rapid, ultra-sensitive, magnetic bioassay”
1909.02204 -
q-bio.QM arXiv submitted 2019-09-04Fewer than two dozen FRET distances can reach 2-3 Å protein accuracy
Mykola Dimura +6 · “Automated and optimally FRET-assisted structural modeling”
1909.02148 -
physics.bio-ph arXiv submitted 2019-09-04Rigid protein chains raise membrane viscosity more than monomers
Brian A. Camley +1 · “Motion of objects embedded in lipid bilayer membranes: advection and effective viscosity”
1909.02066 -
physics.bio-ph arXiv submitted 2019-09-03Two correction formulas make tethered-particle data quantitative
Manoel Manghi +2 · “Statistical physics and mesoscopic modeling to interpret tethered particle motion experiments”
1909.01429 -
cond-mat.dis-nn arXiv submitted 2019-09-03RNA-DNA unzipping confirms the 1-d random-force toy model
Kay Joerg Wiese +3 · “Universal Force Correlations in an RNA-DNA Unzipping Experiment”
1909.01319 -
cond-mat.dis-nn arXiv submitted 2019-09-03Protein conductance obeys a vibration-driven formula
Eszter Papp +3 · “A Landauer Formula for Bioelectronic Applications”
1909.01196 -
physics.bio-ph arXiv submitted 2019-09-03A single snapshot maps a flowing cell nucleus's refractive index
Gili Dardikman +6 · “Integral refractive index imaging of flowing cell nuclei using quantitative phase microscopy combined with fluorescence microscopy”
1910.00108 -
q-bio.BM arXiv submitted 2019-09-03CITED2 dominates TAZ1 binding in thermodynamics and kinetics
Wen-Ting Chu +2 · “Investigations of the Underlying Mechanisms of HIF-1{\alpha} and CITED2 Binding to TAZ1”
1909.00911 -
cond-mat.mtrl-sci arXiv submitted 2019-09-02Soda softens tooth enamel within five minutes
Panpan Li +9 · “Nanoscale characterization of the impact of beverages on the enamel surface of human teeth”
1909.02419 -
physics.chem-ph arXiv submitted 2019-09-02At 7.5 mol % glycerol, water's hydration shells start to overlap
Ali Charkhesht +5 · “Insights into Hydration Dynamics and Cooperative Interactions in Glycerol-Water Mixtures by Terahertz Dielectric Spectroscopy”
1909.00872 -
cs.CE arXiv submitted 2019-09-02One geometric filter finds redesign instances with small tree-width
David Allouche · “Computation Protein Design instances with small tree-width: selection based on coarse approximated 3D average position volume”
1909.01803 -
physics.bio-ph arXiv submitted 2019-09-01Dimer assembly is limited by diversity times volume
Mobolaji Williams · “Self-assembly of a dimer system”
1909.00455 -
cond-mat.soft arXiv submitted 2019-08-31Membrane stacks switch to alternating charges that attract
Arghya Majee +3 · “Charge regulation radically modifies electrostatics in membrane stacks”
1909.00217 -
q-bio.MN arXiv submitted 2019-08-30Coupled feedback can raise mean and cut gene expression noise
Chen Jia +3 · “Single-cell stochastic gene expression kinetics with coupled positive-plus-negative feedback”
1909.00042 -
q-bio.BM arXiv submitted 2019-08-30Protein field theory predicts beta strands near 12 Å
Dmitry Melnikov +1 · “A Continuous Effective Model of the Protein Dynamics”
1908.11739 -
q-bio.TO arXiv submitted 2019-08-30Clone sizes in developing organs collapse onto one universal curve
Steffen Rulands +9 · “Universality of clone dynamics during tissue development”
1909.01439 -
astro-ph.EP arXiv submitted 2019-08-29RNA life's likely birthday: 4.36 billion years ago
Steven A. Benner +9 · “When did Life Likely Emerge on Earth in an RNA-First Process?”
1908.11327 -
physics.bio-ph arXiv submitted 2019-08-29One kinetic framework unites motors
Mauro L. Mugnai +3 · “Theoretical Perspectives on Biological Machines”
1908.11323 -
physics.bio-ph arXiv submitted 2019-08-29Microtubule copying flips on above a rescue threshold of ~0.36
Marco Saltini +1 · “Critical threshold for microtubule amplification through templated severing”
1908.11144 -
physics.bio-ph arXiv submitted 2019-08-29One amino acid swap changes how nanoparticles move on peptides
Indrani Chakraborty +4 · “Nanoparticle mobility over a surface as a probe for weak transient disordered peptide-peptide interactions”
1908.11117 -
q-bio.PE arXiv submitted 2019-08-28Gut microbiome runs on four feeding levels
Tong Wang +3 · “Evidence for a multi-level trophic organization of the human gut microbiome”
1908.10963 -
cond-mat.soft arXiv submitted 2019-08-28Alignment makes homing foragers circle their home in unison
J. Noetel +1 · “Analysis of aligning active local searchers orbiting around their common home position”
1908.10658 -
physics.bio-ph arXiv submitted 2019-08-28Fluorescence video alone yields liver transport rates
Meysam Tavakoli +4 · “Quantitative Kinetic Models from Intravital Microcopy: A Case Study Using Hepatic Transport”
1908.10564 -
physics.bio-ph arXiv submitted 2019-08-28Restrained degradation may explain why gene noise exceeds Poisson
Yan-Ling Feng +4 · “Effects of restrained degradation on gene expression and regulation”
1908.10511 -
physics.chem-ph arXiv submitted 2019-08-27Force fields build themselves from one structure and its Hessian
Christoph Brunken +1 · “Self-Parametrizing System-Focused Atomistic Models”
1908.10492 -
physics.bio-ph arXiv submitted 2019-08-27No binning: GP inference yields continuous force curves
J Shepard Bryan IV +2 · “Inferring effective forces for Langevin dynamics using Gaussian processes”
1908.10484 -
physics.bio-ph arXiv submitted 2019-08-27One-legged spider teams outrun two-legged when tethered
David Arredondo +1 · “Tethered single-legged molecular spiders on independent 1D tracks”
1909.01872 -
physics.bio-ph arXiv submitted 2019-08-27TiO2 particles amplify dye fluorescence up to 40-fold
S. Bonnefond +6 · “Multiple scattering-assisted fluorescence amplification: towards biological applications”
1908.10199